Hb_001133_030

Information

Type -
Description -
Location Contig1133: 20263-33027
Sequence    

Annotation

kegg
ID rcu:RCOM_1381000
description hypothetical protein
nr
ID XP_012067042.1
description PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
swissprot
ID Q9FIN7
description MAG2-interacting protein 2 OS=Arabidopsis thaliana GN=MIP2 PE=1 SV=1
trembl
ID B9RPL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1381000 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mag2-interacting protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03962: 20310-23382 , PASA_asmbl_03963: 23419-24834 , PASA_asmbl_03964: 24837-27934 , PASA_asmbl_03965: 25966-27018 , PASA_asmbl_03966: 27947-29211 , PASA_asmbl_03968: 29707-30612 , PASA_asmbl_03969: 30641-32751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001133_030 0.0 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
2 Hb_000925_090 0.0385031694 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
3 Hb_009486_170 0.0389470421 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
4 Hb_012244_020 0.0542870003 - - calpain, putative [Ricinus communis]
5 Hb_011689_030 0.0592509887 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
6 Hb_000003_410 0.0601394183 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
7 Hb_002521_020 0.0603663489 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
8 Hb_000665_230 0.0606210826 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
9 Hb_000083_070 0.0606356602 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
10 Hb_003805_040 0.0612976574 - - Sacsin [Glycine soja]
11 Hb_000086_690 0.0659930112 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
12 Hb_005186_040 0.0671615985 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
13 Hb_002909_120 0.0671906842 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
14 Hb_001124_050 0.0672807185 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
15 Hb_000958_050 0.0680551209 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
16 Hb_002333_050 0.0684688367 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
17 Hb_002600_060 0.0685846842 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
18 Hb_000934_210 0.0693100193 - - suppressor of ty, putative [Ricinus communis]
19 Hb_001377_100 0.0705164388 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
20 Hb_001085_030 0.0710606977 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001133_030 Hb_001133_030 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_009486_170 Hb_009486_170 Hb_001133_030--Hb_009486_170 Hb_012244_020 Hb_012244_020 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_000925_090--Hb_012244_020 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_005186_040 Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210 Hb_011689_030--Hb_000665_230 Hb_005357_260 Hb_005357_260 Hb_011689_030--Hb_005357_260 Hb_000176_100 Hb_000176_100 Hb_011689_030--Hb_000176_100 Hb_011689_030--Hb_009486_170 Hb_000958_050 Hb_000958_050 Hb_011689_030--Hb_000958_050 Hb_000003_410--Hb_000958_050 Hb_000003_410--Hb_000934_210 Hb_003216_090 Hb_003216_090 Hb_000003_410--Hb_003216_090 Hb_021596_010 Hb_021596_010 Hb_000003_410--Hb_021596_010 Hb_000009_410 Hb_000009_410 Hb_000003_410--Hb_000009_410 Hb_010180_060 Hb_010180_060 Hb_002521_020--Hb_010180_060 Hb_002521_020--Hb_005186_040 Hb_001124_050 Hb_001124_050 Hb_002521_020--Hb_001124_050 Hb_002521_020--Hb_009486_170 Hb_001377_100 Hb_001377_100 Hb_002521_020--Hb_001377_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.5865 15.4538 6.38405 7.38258 8.78233 9.15062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33313 3.81174 5.51025 10.7296 16.3111

CAGE analysis