Hb_011174_020

Information

Type -
Description -
Location Contig11174: 11725-14835
Sequence    

Annotation

kegg
ID rcu:RCOM_1677180
description metalloendopeptidase, putative
nr
ID XP_012070431.1
description PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
swissprot
ID Q8TP15
description Protease HtpX homolog 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX2 PE=3 SV=1
trembl
ID A0A067LG61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10123 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protease -2-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03565: 11983-13304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011174_020 0.0 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
2 Hb_012244_020 0.0458003606 - - calpain, putative [Ricinus communis]
3 Hb_003040_050 0.0563025109 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
4 Hb_000568_050 0.0563978432 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
5 Hb_002805_210 0.0569229956 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
6 Hb_001925_060 0.0575762318 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
7 Hb_017469_110 0.0591687489 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
8 Hb_000795_040 0.060133997 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
9 Hb_000363_300 0.0626564465 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
10 Hb_009288_020 0.0635528044 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
11 Hb_001648_020 0.0635786543 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
12 Hb_000934_210 0.0640792578 - - suppressor of ty, putative [Ricinus communis]
13 Hb_123531_010 0.0643723619 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
14 Hb_002357_070 0.0659197241 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
15 Hb_012055_110 0.0679992383 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
16 Hb_001377_100 0.0695298104 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
17 Hb_006031_010 0.0697761546 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
18 Hb_002007_110 0.0701459871 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
19 Hb_013459_020 0.0704707915 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
20 Hb_003849_280 0.0710113814 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]

Gene co-expression network

sample Hb_011174_020 Hb_011174_020 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_005186_040 Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210 Hb_009288_020 Hb_009288_020 Hb_003040_050--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_003040_050--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_003040_050--Hb_006663_060 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_003040_050--Hb_001925_060 Hb_012055_110 Hb_012055_110 Hb_000568_050--Hb_012055_110 Hb_000568_050--Hb_006663_060 Hb_000011_270 Hb_000011_270 Hb_000568_050--Hb_000011_270 Hb_000608_300 Hb_000608_300 Hb_000568_050--Hb_000608_300 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070 Hb_027472_220 Hb_027472_220 Hb_002805_210--Hb_027472_220 Hb_002805_210--Hb_012244_020 Hb_002805_210--Hb_000934_210 Hb_001157_160 Hb_001157_160 Hb_002805_210--Hb_001157_160 Hb_123531_010 Hb_123531_010 Hb_002805_210--Hb_123531_010 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040 Hb_013459_020 Hb_013459_020 Hb_017469_110--Hb_013459_020 Hb_017469_110--Hb_000795_040 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_002581_010 Hb_002581_010 Hb_017469_110--Hb_002581_010 Hb_001008_070 Hb_001008_070 Hb_017469_110--Hb_001008_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.57755 11.3637 6.87189 8.04456 6.71182 7.30747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.61274 5.71168 4.38687 10.0928 14.6341

CAGE analysis