Hb_002581_010

Information

Type -
Description -
Location Contig2581: 21327-52756
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09630g
description POPTRDRAFT_558701; hypothetical protein
nr
ID XP_012081407.1
description PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
swissprot
ID Q9D5T0
description ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1
trembl
ID A0A067KDM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19116 PE=3 SV=1
Gene Ontology
ID GO:0005524
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26866: 23323-52730 , PASA_asmbl_26867: 21416-29815 , PASA_asmbl_26868: 51506-51626 , PASA_asmbl_26869: 48800-49228 , PASA_asmbl_26871: 27668-29838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002581_010 0.0 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
2 Hb_001008_070 0.0462970256 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
3 Hb_000795_040 0.0571986333 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
4 Hb_003117_030 0.0622223457 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
5 Hb_017469_110 0.0647108085 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
6 Hb_000599_270 0.0653828074 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
7 Hb_007413_010 0.06659944 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
8 Hb_001925_060 0.0668281069 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
9 Hb_033312_130 0.0702312521 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
10 Hb_005260_030 0.0749150668 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
11 Hb_001377_190 0.0773597689 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
12 Hb_002357_070 0.0773722959 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
13 Hb_188281_040 0.0777956791 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
14 Hb_011174_020 0.0792699518 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
15 Hb_000749_010 0.0796778662 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
16 Hb_000181_100 0.0797181563 - - PREDICTED: protein starmaker [Jatropha curcas]
17 Hb_007955_050 0.0805952085 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
18 Hb_002411_110 0.0810975594 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
19 Hb_073171_070 0.0819667698 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
20 Hb_000270_170 0.0824520906 - - PREDICTED: formin-like protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002581_010 Hb_002581_010 Hb_001008_070 Hb_001008_070 Hb_002581_010--Hb_001008_070 Hb_000795_040 Hb_000795_040 Hb_002581_010--Hb_000795_040 Hb_003117_030 Hb_003117_030 Hb_002581_010--Hb_003117_030 Hb_017469_110 Hb_017469_110 Hb_002581_010--Hb_017469_110 Hb_000599_270 Hb_000599_270 Hb_002581_010--Hb_000599_270 Hb_007413_010 Hb_007413_010 Hb_002581_010--Hb_007413_010 Hb_000181_100 Hb_000181_100 Hb_001008_070--Hb_000181_100 Hb_001008_070--Hb_017469_110 Hb_001008_070--Hb_000795_040 Hb_000958_050 Hb_000958_050 Hb_001008_070--Hb_000958_050 Hb_000320_470 Hb_000320_470 Hb_001008_070--Hb_000320_470 Hb_000085_210 Hb_000085_210 Hb_000795_040--Hb_000085_210 Hb_011174_020 Hb_011174_020 Hb_000795_040--Hb_011174_020 Hb_000795_040--Hb_017469_110 Hb_001925_060 Hb_001925_060 Hb_000795_040--Hb_001925_060 Hb_000879_040 Hb_000879_040 Hb_000795_040--Hb_000879_040 Hb_003117_030--Hb_007413_010 Hb_005489_040 Hb_005489_040 Hb_003117_030--Hb_005489_040 Hb_188281_040 Hb_188281_040 Hb_003117_030--Hb_188281_040 Hb_001789_110 Hb_001789_110 Hb_003117_030--Hb_001789_110 Hb_003117_030--Hb_001925_060 Hb_013459_020 Hb_013459_020 Hb_017469_110--Hb_013459_020 Hb_017469_110--Hb_011174_020 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_021374_030 Hb_021374_030 Hb_000599_270--Hb_021374_030 Hb_006913_020 Hb_006913_020 Hb_000599_270--Hb_006913_020 Hb_000599_270--Hb_007413_010 Hb_000599_270--Hb_017469_110 Hb_002205_230 Hb_002205_230 Hb_000599_270--Hb_002205_230 Hb_007413_010--Hb_006913_020 Hb_008948_020 Hb_008948_020 Hb_007413_010--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_007413_010--Hb_001925_060 Hb_007413_010--Hb_001789_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.88639 14.3233 13.9594 8.28159 6.8048 9.40677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47151 7.76044 7.58718 14.3914 18.866

CAGE analysis