Hb_001008_070

Information

Type -
Description -
Location Contig1008: 59149-64439
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17340g
description POPTRDRAFT_751482; transducin family protein
nr
ID XP_012073236.1
description PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
swissprot
ID Q5RFQ3
description Periodic tryptophan protein 2 homolog OS=Pongo abelii GN=PWP2 PE=2 SV=1
trembl
ID E6NUE1
description JHL25H03.15 protein OS=Jatropha curcas GN=JHL25H03.15 PE=4 SV=1
Gene Ontology
ID GO:0005730
description periodic tryptophan protein 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00472: 59103-60385 , PASA_asmbl_00473: 60404-61516 , PASA_asmbl_00474: 61588-62150 , PASA_asmbl_00475: 62465-63383 , PASA_asmbl_00476: 63702-63988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_070 0.0 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
2 Hb_002581_010 0.0462970256 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
3 Hb_000181_100 0.0653908731 - - PREDICTED: protein starmaker [Jatropha curcas]
4 Hb_017469_110 0.0663527403 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
5 Hb_000795_040 0.0664222352 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
6 Hb_000958_050 0.0665453747 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
7 Hb_000320_470 0.0710543344 - - calcium-dependent protein kinase [Hevea brasiliensis]
8 Hb_089246_010 0.0736282768 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
9 Hb_000996_020 0.0747494784 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
10 Hb_012055_110 0.0750319477 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
11 Hb_013459_020 0.0753091456 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
12 Hb_005701_050 0.0774253679 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
13 Hb_033312_130 0.07744195 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
14 Hb_002357_070 0.0783877022 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
15 Hb_000879_040 0.0795059287 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
16 Hb_003929_210 0.079852096 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
17 Hb_026053_040 0.0800141218 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000664_120 0.0803106694 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
19 Hb_001999_140 0.0805368843 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_000270_190 0.0817684399 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001008_070 Hb_001008_070 Hb_002581_010 Hb_002581_010 Hb_001008_070--Hb_002581_010 Hb_000181_100 Hb_000181_100 Hb_001008_070--Hb_000181_100 Hb_017469_110 Hb_017469_110 Hb_001008_070--Hb_017469_110 Hb_000795_040 Hb_000795_040 Hb_001008_070--Hb_000795_040 Hb_000958_050 Hb_000958_050 Hb_001008_070--Hb_000958_050 Hb_000320_470 Hb_000320_470 Hb_001008_070--Hb_000320_470 Hb_002581_010--Hb_000795_040 Hb_003117_030 Hb_003117_030 Hb_002581_010--Hb_003117_030 Hb_002581_010--Hb_017469_110 Hb_000599_270 Hb_000599_270 Hb_002581_010--Hb_000599_270 Hb_007413_010 Hb_007413_010 Hb_002581_010--Hb_007413_010 Hb_000181_100--Hb_000320_470 Hb_004800_180 Hb_004800_180 Hb_000181_100--Hb_004800_180 Hb_005601_020 Hb_005601_020 Hb_000181_100--Hb_005601_020 Hb_026053_040 Hb_026053_040 Hb_000181_100--Hb_026053_040 Hb_031091_020 Hb_031091_020 Hb_000181_100--Hb_031091_020 Hb_013459_020 Hb_013459_020 Hb_017469_110--Hb_013459_020 Hb_011174_020 Hb_011174_020 Hb_017469_110--Hb_011174_020 Hb_017469_110--Hb_000795_040 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_000085_210 Hb_000085_210 Hb_000795_040--Hb_000085_210 Hb_000795_040--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_000795_040--Hb_001925_060 Hb_000879_040 Hb_000879_040 Hb_000795_040--Hb_000879_040 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_002007_110 Hb_002007_110 Hb_000958_050--Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_000958_050--Hb_012055_110 Hb_000320_470--Hb_026053_040 Hb_001008_050 Hb_001008_050 Hb_000320_470--Hb_001008_050 Hb_000320_470--Hb_031091_020 Hb_089246_010 Hb_089246_010 Hb_000320_470--Hb_089246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77316 4.42843 4.37894 2.72384 2.1878 3.05501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4721 1.87824 2.00132 3.74681 5.90465

CAGE analysis