Hb_004800_180

Information

Type -
Description -
Location Contig4800: 141327-148288
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12750g
description POPTRDRAFT_219180; Succinate dehydrogenase flavoprotein subunit
nr
ID XP_011025771.1
description PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
swissprot
ID O82663
description Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1
trembl
ID B9HEW3
description Succinate dehydrogenase flavoprotein subunit OS=Populus trichocarpa GN=POPTR_0007s12750g PE=4 SV=1
Gene Ontology
ID GO:0005749
description succinate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44699: 141418-148177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_180 0.0 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
2 Hb_000103_570 0.0575437015 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
3 Hb_000181_100 0.0606929265 - - PREDICTED: protein starmaker [Jatropha curcas]
4 Hb_000864_030 0.0636542428 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
5 Hb_000563_420 0.0702165211 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
6 Hb_000665_120 0.0799921583 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
7 Hb_000679_020 0.0819346598 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
8 Hb_000523_080 0.0823348686 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
9 Hb_003186_020 0.0834934394 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
10 Hb_000879_040 0.0836297702 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
11 Hb_017151_010 0.0845842875 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
12 Hb_002304_060 0.0856431224 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
13 Hb_000917_320 0.0867994036 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
14 Hb_001268_280 0.087202074 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000320_470 0.0875211207 - - calcium-dependent protein kinase [Hevea brasiliensis]
16 Hb_000115_280 0.0877376366 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
17 Hb_000134_270 0.0879433636 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
18 Hb_028872_070 0.0888936309 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
19 Hb_000563_130 0.0894678788 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
20 Hb_003943_020 0.0894828747 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004800_180 Hb_004800_180 Hb_000103_570 Hb_000103_570 Hb_004800_180--Hb_000103_570 Hb_000181_100 Hb_000181_100 Hb_004800_180--Hb_000181_100 Hb_000864_030 Hb_000864_030 Hb_004800_180--Hb_000864_030 Hb_000563_420 Hb_000563_420 Hb_004800_180--Hb_000563_420 Hb_000665_120 Hb_000665_120 Hb_004800_180--Hb_000665_120 Hb_000679_020 Hb_000679_020 Hb_004800_180--Hb_000679_020 Hb_001221_180 Hb_001221_180 Hb_000103_570--Hb_001221_180 Hb_004064_050 Hb_004064_050 Hb_000103_570--Hb_004064_050 Hb_000103_570--Hb_000181_100 Hb_001723_140 Hb_001723_140 Hb_000103_570--Hb_001723_140 Hb_000523_080 Hb_000523_080 Hb_000103_570--Hb_000523_080 Hb_000320_470 Hb_000320_470 Hb_000181_100--Hb_000320_470 Hb_001008_070 Hb_001008_070 Hb_000181_100--Hb_001008_070 Hb_005601_020 Hb_005601_020 Hb_000181_100--Hb_005601_020 Hb_026053_040 Hb_026053_040 Hb_000181_100--Hb_026053_040 Hb_031091_020 Hb_031091_020 Hb_000181_100--Hb_031091_020 Hb_000864_030--Hb_000679_020 Hb_000174_170 Hb_000174_170 Hb_000864_030--Hb_000174_170 Hb_008059_010 Hb_008059_010 Hb_000864_030--Hb_008059_010 Hb_000864_030--Hb_000563_420 Hb_000115_280 Hb_000115_280 Hb_000864_030--Hb_000115_280 Hb_055235_020 Hb_055235_020 Hb_000563_420--Hb_055235_020 Hb_000563_420--Hb_000115_280 Hb_000318_120 Hb_000318_120 Hb_000563_420--Hb_000318_120 Hb_007044_110 Hb_007044_110 Hb_000563_420--Hb_007044_110 Hb_007765_100 Hb_007765_100 Hb_000665_120--Hb_007765_100 Hb_000797_040 Hb_000797_040 Hb_000665_120--Hb_000797_040 Hb_028960_020 Hb_028960_020 Hb_000665_120--Hb_028960_020 Hb_002205_030 Hb_002205_030 Hb_000665_120--Hb_002205_030 Hb_000665_120--Hb_008059_010 Hb_002811_270 Hb_002811_270 Hb_000665_120--Hb_002811_270 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000679_020--Hb_000174_170 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_000906_100 Hb_000906_100 Hb_000679_020--Hb_000906_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.7734 33.0345 44.774 24.7299 36.6673 33.3689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6647 13.5377 22.4572 41.1367 52.4893

CAGE analysis