Hb_004064_050

Information

Type -
Description -
Location Contig4064: 95277-112350
Sequence    

Annotation

kegg
ID rcu:RCOM_0573510
description Structural maintenance of chromosome, putative
nr
ID XP_002529661.1
description Structural maintenance of chromosome, putative [Ricinus communis]
swissprot
ID Q56YN8
description Structural maintenance of chromosomes protein 3 OS=Arabidopsis thaliana GN=SMC3 PE=2 SV=1
trembl
ID B9SUJ2
description Structural maintenance of chromosomes protein OS=Ricinus communis GN=RCOM_0573510 PE=3 SV=1
Gene Ontology
ID GO:0000785
description structural maintenance of chromosomes protein 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40316: 95347-112350 , PASA_asmbl_40317: 107674-107956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004064_050 0.0 - - Structural maintenance of chromosome, putative [Ricinus communis]
2 Hb_002475_040 0.0675391381 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
3 Hb_158092_080 0.0681707655 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
4 Hb_000243_130 0.07295725 - - hypothetical protein M569_10795, partial [Genlisea aurea]
5 Hb_005402_040 0.0741667516 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
6 Hb_003124_160 0.0751748009 - - dynamin, putative [Ricinus communis]
7 Hb_000377_050 0.0777864553 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
8 Hb_000103_570 0.0779267598 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
9 Hb_002631_140 0.0791862446 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
10 Hb_012055_110 0.0797793123 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
11 Hb_002641_130 0.0803982958 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
12 Hb_000086_150 0.0805402346 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
13 Hb_088144_020 0.0813256867 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
14 Hb_000256_020 0.0829269401 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
15 Hb_005357_260 0.082998347 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
16 Hb_001381_050 0.0838448994 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_007123_050 0.085116391 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
18 Hb_006618_090 0.0852594965 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
19 Hb_007894_160 0.085729465 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
20 Hb_011202_020 0.0863587304 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004064_050 Hb_004064_050 Hb_002475_040 Hb_002475_040 Hb_004064_050--Hb_002475_040 Hb_158092_080 Hb_158092_080 Hb_004064_050--Hb_158092_080 Hb_000243_130 Hb_000243_130 Hb_004064_050--Hb_000243_130 Hb_005402_040 Hb_005402_040 Hb_004064_050--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_004064_050--Hb_003124_160 Hb_000377_050 Hb_000377_050 Hb_004064_050--Hb_000377_050 Hb_000284_230 Hb_000284_230 Hb_002475_040--Hb_000284_230 Hb_002475_040--Hb_158092_080 Hb_002475_040--Hb_003124_160 Hb_012055_110 Hb_012055_110 Hb_002475_040--Hb_012055_110 Hb_001935_160 Hb_001935_160 Hb_002475_040--Hb_001935_160 Hb_007123_050 Hb_007123_050 Hb_158092_080--Hb_007123_050 Hb_158092_080--Hb_000284_230 Hb_007894_160 Hb_007894_160 Hb_158092_080--Hb_007894_160 Hb_000608_300 Hb_000608_300 Hb_158092_080--Hb_000608_300 Hb_044486_040 Hb_044486_040 Hb_000243_130--Hb_044486_040 Hb_000243_130--Hb_007894_160 Hb_033554_020 Hb_033554_020 Hb_000243_130--Hb_033554_020 Hb_000243_130--Hb_002475_040 Hb_009486_080 Hb_009486_080 Hb_000243_130--Hb_009486_080 Hb_027472_220 Hb_027472_220 Hb_005402_040--Hb_027472_220 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_003124_160--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_003124_160--Hb_000261_030 Hb_009476_090 Hb_009476_090 Hb_000377_050--Hb_009476_090 Hb_007283_030 Hb_007283_030 Hb_000377_050--Hb_007283_030 Hb_005832_010 Hb_005832_010 Hb_000377_050--Hb_005832_010 Hb_001959_270 Hb_001959_270 Hb_000377_050--Hb_001959_270 Hb_007818_040 Hb_007818_040 Hb_000377_050--Hb_007818_040 Hb_000703_130 Hb_000703_130 Hb_000377_050--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4856 21.9312 19.3565 13.6518 20.6484 17.8899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27328 4.98314 9.3618 23.0059 24.0027

CAGE analysis