Hb_000284_230

Information

Type -
Description -
Location Contig284: 258192-261640
Sequence    

Annotation

kegg
ID rcu:RCOM_1374130
description hypothetical protein
nr
ID XP_012066650.1
description PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
swissprot
ID Q94CC0
description Uncharacterized protein At5g49945 OS=Arabidopsis thaliana GN=At5g49945 PE=2 SV=1
trembl
ID A0A067LEA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00221 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29741: 258147-261604
cDNA
(Sanger)
(ID:Location)		 003_A09.ab1: 260851-261604

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_230 0.0 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
2 Hb_002475_040 0.058634711 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
3 Hb_001194_020 0.0596484158 - - microtubule associated protein xmap215, putative [Ricinus communis]
4 Hb_000358_100 0.0615539361 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
5 Hb_008397_010 0.0676271638 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
6 Hb_073973_150 0.0680983514 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
7 Hb_006355_020 0.0725651736 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
8 Hb_158092_080 0.0743781367 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
9 Hb_001059_130 0.0750036956 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
10 Hb_012055_110 0.0755496298 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
11 Hb_000066_150 0.076651419 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
12 Hb_000020_160 0.0772464679 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
13 Hb_009252_050 0.0773585121 - - protein binding protein, putative [Ricinus communis]
14 Hb_000001_170 0.0783939644 - - amino acid transporter, putative [Ricinus communis]
15 Hb_003417_010 0.0802026389 - - PREDICTED: protein TPLATE [Jatropha curcas]
16 Hb_004109_370 0.0806730504 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_000261_100 0.0808710486 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
18 Hb_003124_160 0.0817356055 - - dynamin, putative [Ricinus communis]
19 Hb_007894_160 0.0843134467 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
20 Hb_000640_070 0.0853876607 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000284_230 Hb_000284_230 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_001194_020 Hb_001194_020 Hb_000284_230--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_000284_230--Hb_006355_020 Hb_004064_050 Hb_004064_050 Hb_002475_040--Hb_004064_050 Hb_158092_080 Hb_158092_080 Hb_002475_040--Hb_158092_080 Hb_003124_160 Hb_003124_160 Hb_002475_040--Hb_003124_160 Hb_012055_110 Hb_012055_110 Hb_002475_040--Hb_012055_110 Hb_001935_160 Hb_001935_160 Hb_002475_040--Hb_001935_160 Hb_001194_020--Hb_008397_010 Hb_000640_070 Hb_000640_070 Hb_001194_020--Hb_000640_070 Hb_001194_020--Hb_073973_150 Hb_001194_020--Hb_006355_020 Hb_001059_130 Hb_001059_130 Hb_001194_020--Hb_001059_130 Hb_000020_160 Hb_000020_160 Hb_000358_100--Hb_000020_160 Hb_000359_190 Hb_000359_190 Hb_000358_100--Hb_000359_190 Hb_000066_150 Hb_000066_150 Hb_000358_100--Hb_000066_150 Hb_007245_020 Hb_007245_020 Hb_000358_100--Hb_007245_020 Hb_000172_340 Hb_000172_340 Hb_000358_100--Hb_000172_340 Hb_008397_010--Hb_000640_070 Hb_000336_020 Hb_000336_020 Hb_008397_010--Hb_000336_020 Hb_008397_010--Hb_073973_150 Hb_007894_160 Hb_007894_160 Hb_008397_010--Hb_007894_160 Hb_073973_150--Hb_000640_070 Hb_003104_040 Hb_003104_040 Hb_073973_150--Hb_003104_040 Hb_073973_150--Hb_002475_040 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_162275_040 Hb_162275_040 Hb_006355_020--Hb_162275_040 Hb_006355_020--Hb_001059_130 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.6619 39.324 30.5114 48.6517 40.7895 32.4954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4958 11.1401 14.2006 39.3578 46.7387

CAGE analysis