Hb_158092_080

Information

Type -
Description -
Location Contig158092: 57347-61306
Sequence    

Annotation

kegg
ID tcc:TCM_008329
description Glycyl-tRNA synthetase / glycine--tRNA ligase
nr
ID KDP23259.1
description hypothetical protein JCGZ_23092 [Jatropha curcas]
swissprot
ID O23627
description Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1
trembl
ID A0A067JUR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23092 PE=3 SV=1
Gene Ontology
ID GO:0004820
description glycine--trna ligase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13918: 57259-61321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158092_080 0.0 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
2 Hb_007123_050 0.0643715367 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
3 Hb_002475_040 0.0677105274 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
4 Hb_004064_050 0.0681707655 - - Structural maintenance of chromosome, putative [Ricinus communis]
5 Hb_000284_230 0.0743781367 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
6 Hb_007894_160 0.0849156518 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
7 Hb_000608_300 0.0880095721 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
8 Hb_156850_090 0.0885849316 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_000243_130 0.0899727084 - - hypothetical protein M569_10795, partial [Genlisea aurea]
10 Hb_012055_110 0.08998722 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
11 Hb_001221_180 0.0921712311 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_000001_170 0.0938990692 - - amino acid transporter, putative [Ricinus communis]
13 Hb_001381_050 0.0949354789 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
14 Hb_000011_270 0.0953874574 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
15 Hb_002641_130 0.0973890941 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
16 Hb_004306_030 0.0976717025 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
17 Hb_000568_050 0.0991722279 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
18 Hb_008397_010 0.0993658931 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
19 Hb_001789_020 0.0997303403 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
20 Hb_005402_040 0.100181025 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_158092_080 Hb_158092_080 Hb_007123_050 Hb_007123_050 Hb_158092_080--Hb_007123_050 Hb_002475_040 Hb_002475_040 Hb_158092_080--Hb_002475_040 Hb_004064_050 Hb_004064_050 Hb_158092_080--Hb_004064_050 Hb_000284_230 Hb_000284_230 Hb_158092_080--Hb_000284_230 Hb_007894_160 Hb_007894_160 Hb_158092_080--Hb_007894_160 Hb_000608_300 Hb_000608_300 Hb_158092_080--Hb_000608_300 Hb_007123_050--Hb_004064_050 Hb_000243_130 Hb_000243_130 Hb_007123_050--Hb_000243_130 Hb_000608_230 Hb_000608_230 Hb_007123_050--Hb_000608_230 Hb_044486_040 Hb_044486_040 Hb_007123_050--Hb_044486_040 Hb_003913_110 Hb_003913_110 Hb_007123_050--Hb_003913_110 Hb_002475_040--Hb_000284_230 Hb_002475_040--Hb_004064_050 Hb_003124_160 Hb_003124_160 Hb_002475_040--Hb_003124_160 Hb_012055_110 Hb_012055_110 Hb_002475_040--Hb_012055_110 Hb_001935_160 Hb_001935_160 Hb_002475_040--Hb_001935_160 Hb_004064_050--Hb_000243_130 Hb_005402_040 Hb_005402_040 Hb_004064_050--Hb_005402_040 Hb_004064_050--Hb_003124_160 Hb_000377_050 Hb_000377_050 Hb_004064_050--Hb_000377_050 Hb_001194_020 Hb_001194_020 Hb_000284_230--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_000284_230--Hb_006355_020 Hb_000610_040 Hb_000610_040 Hb_007894_160--Hb_000610_040 Hb_007894_160--Hb_008397_010 Hb_002686_040 Hb_002686_040 Hb_007894_160--Hb_002686_040 Hb_007894_160--Hb_000243_130 Hb_103747_020 Hb_103747_020 Hb_007894_160--Hb_103747_020 Hb_007894_160--Hb_002475_040 Hb_004306_030 Hb_004306_030 Hb_000608_300--Hb_004306_030 Hb_001789_040 Hb_001789_040 Hb_000608_300--Hb_001789_040 Hb_000568_050 Hb_000568_050 Hb_000608_300--Hb_000568_050 Hb_002600_060 Hb_002600_060 Hb_000608_300--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_000608_300--Hb_005211_020 Hb_000608_300--Hb_012055_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4305 17.7884 16.0959 18.429 21.0274 14.2969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91575 4.8829 8.90624 26.146 26.5723

CAGE analysis