Hb_008397_010

Information

Type -
Description -
Location Contig8397: 3521-33425
Sequence    

Annotation

kegg
ID rcu:RCOM_0589300
description hypothetical protein
nr
ID XP_012079840.1
description PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LM29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17447 PE=4 SV=1
Gene Ontology
ID GO:0005783
description PREDICTED: uncharacterized protein LOC105640192 isoform X2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60031: 3566-33365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008397_010 0.0 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
2 Hb_000640_070 0.0580129854 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
3 Hb_001194_020 0.0594851768 - - microtubule associated protein xmap215, putative [Ricinus communis]
4 Hb_000336_020 0.0660649789 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
5 Hb_000284_230 0.0676271638 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
6 Hb_073973_150 0.0676281018 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
7 Hb_007894_160 0.0693215907 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
8 Hb_002784_030 0.0718056972 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
9 Hb_002014_040 0.0745718937 - - site-1 protease, putative [Ricinus communis]
10 Hb_001085_110 0.0755816073 - - T6D22.2 [Arabidopsis thaliana]
11 Hb_002007_260 0.075747827 - - beta-mannosidase, putative [Ricinus communis]
12 Hb_000001_170 0.0774490186 - - amino acid transporter, putative [Ricinus communis]
13 Hb_000011_270 0.0774713436 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
14 Hb_004109_370 0.0775339264 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_002475_040 0.0778544869 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
16 Hb_009252_050 0.0790274903 - - protein binding protein, putative [Ricinus communis]
17 Hb_033642_040 0.0803699458 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
18 Hb_000610_040 0.0807285284 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
19 Hb_001856_180 0.0809619407 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
20 Hb_000046_600 0.0812588926 - - PREDICTED: cullin-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_008397_010 Hb_008397_010 Hb_000640_070 Hb_000640_070 Hb_008397_010--Hb_000640_070 Hb_001194_020 Hb_001194_020 Hb_008397_010--Hb_001194_020 Hb_000336_020 Hb_000336_020 Hb_008397_010--Hb_000336_020 Hb_000284_230 Hb_000284_230 Hb_008397_010--Hb_000284_230 Hb_073973_150 Hb_073973_150 Hb_008397_010--Hb_073973_150 Hb_007894_160 Hb_007894_160 Hb_008397_010--Hb_007894_160 Hb_012215_010 Hb_012215_010 Hb_000640_070--Hb_012215_010 Hb_000640_070--Hb_073973_150 Hb_002784_030 Hb_002784_030 Hb_000640_070--Hb_002784_030 Hb_010272_010 Hb_010272_010 Hb_000640_070--Hb_010272_010 Hb_000640_070--Hb_001194_020 Hb_001194_020--Hb_000284_230 Hb_001194_020--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_001194_020--Hb_006355_020 Hb_001059_130 Hb_001059_130 Hb_001194_020--Hb_001059_130 Hb_000996_020 Hb_000996_020 Hb_000336_020--Hb_000996_020 Hb_000529_060 Hb_000529_060 Hb_000336_020--Hb_000529_060 Hb_001856_180 Hb_001856_180 Hb_000336_020--Hb_001856_180 Hb_012055_110 Hb_012055_110 Hb_000336_020--Hb_012055_110 Hb_002849_170 Hb_002849_170 Hb_000336_020--Hb_002849_170 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_000284_230--Hb_073973_150 Hb_000284_230--Hb_006355_020 Hb_003104_040 Hb_003104_040 Hb_073973_150--Hb_003104_040 Hb_073973_150--Hb_002475_040 Hb_000610_040 Hb_000610_040 Hb_007894_160--Hb_000610_040 Hb_002686_040 Hb_002686_040 Hb_007894_160--Hb_002686_040 Hb_000243_130 Hb_000243_130 Hb_007894_160--Hb_000243_130 Hb_103747_020 Hb_103747_020 Hb_007894_160--Hb_103747_020 Hb_007894_160--Hb_002475_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.90597 12.7191 16.0764 17.1655 13.3076 13.2082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.83312 5.51381 5.16762 15.4037 14.6378

CAGE analysis