Hb_012215_010

Information

Type -
Description -
Location Contig12215: 7797-12313
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08030g
description POPTRDRAFT_564146; hypothetical protein
nr
ID XP_011012686.1
description PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
swissprot
ID Q91YT7
description YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=2 SV=1
trembl
ID B9HI18
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08030g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06777: 7723-12290 , PASA_asmbl_06778: 7723-12290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012215_010 0.0 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
2 Hb_002539_110 0.0533426114 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
3 Hb_010272_010 0.054223013 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
4 Hb_000640_070 0.0546379712 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
5 Hb_000362_170 0.0630213235 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
6 Hb_000664_110 0.0675314158 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
7 Hb_001005_030 0.0701415878 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
8 Hb_002784_030 0.0703107235 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
9 Hb_005895_010 0.0705823994 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
10 Hb_003104_040 0.07195916 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
11 Hb_000737_030 0.0747770106 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
12 Hb_005227_010 0.0756233192 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
13 Hb_000933_010 0.0759630338 - - -
14 Hb_005946_210 0.0762183643 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
15 Hb_007800_020 0.0775229598 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
16 Hb_000007_280 0.0776318805 - - hypothetical protein VITISV_000066 [Vitis vinifera]
17 Hb_001377_110 0.0798935259 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
18 Hb_000373_080 0.0803090854 - - PREDICTED: serine decarboxylase [Jatropha curcas]
19 Hb_000214_050 0.0812278957 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
20 Hb_001269_210 0.0818602559 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012215_010 Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_012215_010--Hb_002539_110 Hb_010272_010 Hb_010272_010 Hb_012215_010--Hb_010272_010 Hb_000640_070 Hb_000640_070 Hb_012215_010--Hb_000640_070 Hb_000362_170 Hb_000362_170 Hb_012215_010--Hb_000362_170 Hb_000664_110 Hb_000664_110 Hb_012215_010--Hb_000664_110 Hb_001005_030 Hb_001005_030 Hb_012215_010--Hb_001005_030 Hb_002539_110--Hb_010272_010 Hb_002539_110--Hb_000362_170 Hb_005895_010 Hb_005895_010 Hb_002539_110--Hb_005895_010 Hb_162275_040 Hb_162275_040 Hb_002539_110--Hb_162275_040 Hb_013726_080 Hb_013726_080 Hb_002539_110--Hb_013726_080 Hb_005946_210 Hb_005946_210 Hb_010272_010--Hb_005946_210 Hb_010272_010--Hb_000640_070 Hb_010272_010--Hb_000664_110 Hb_002014_040 Hb_002014_040 Hb_010272_010--Hb_002014_040 Hb_073973_150 Hb_073973_150 Hb_000640_070--Hb_073973_150 Hb_008397_010 Hb_008397_010 Hb_000640_070--Hb_008397_010 Hb_002784_030 Hb_002784_030 Hb_000640_070--Hb_002784_030 Hb_001194_020 Hb_001194_020 Hb_000640_070--Hb_001194_020 Hb_000362_170--Hb_005895_010 Hb_000362_170--Hb_002014_040 Hb_000362_170--Hb_001005_030 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_000664_110--Hb_005946_210 Hb_000664_110--Hb_000640_070 Hb_001109_060 Hb_001109_060 Hb_000664_110--Hb_001109_060 Hb_000664_110--Hb_000362_170 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7779 12.0255 15.1285 17.4244 15.3002 16.7929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.82235 5.61905 6.99263 10.8332 13.9639

CAGE analysis