Hb_001194_020

Information

Type -
Description -
Location Contig1194: 45311-76348
Sequence    

Annotation

kegg
ID rcu:RCOM_0214170
description microtubule associated protein xmap215, putative
nr
ID XP_002534264.1
description microtubule associated protein xmap215, putative [Ricinus communis]
swissprot
ID Q94FN2
description Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1
trembl
ID B9T7P5
description Microtubule associated protein xmap215, putative OS=Ricinus communis GN=RCOM_0214170 PE=4 SV=1
Gene Ontology
ID GO:0009506
description protein mor1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05734: 45297-76315 , PASA_asmbl_05735: 71727-72018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001194_020 0.0 - - microtubule associated protein xmap215, putative [Ricinus communis]
2 Hb_008397_010 0.0594851768 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
3 Hb_000284_230 0.0596484158 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
4 Hb_000640_070 0.0612187503 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
5 Hb_073973_150 0.0629693934 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
6 Hb_006355_020 0.076491514 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
7 Hb_001059_130 0.0776469104 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
8 Hb_000820_150 0.0787428053 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
9 Hb_000358_100 0.079200104 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
10 Hb_000066_150 0.0821100168 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
11 Hb_002784_030 0.0839332226 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
12 Hb_000588_080 0.0843407016 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
13 Hb_010315_020 0.0852734961 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
14 Hb_002475_040 0.0863180323 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
15 Hb_000020_160 0.0865816019 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
16 Hb_000336_020 0.0870932775 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
17 Hb_012055_110 0.0901661612 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
18 Hb_162275_040 0.0910821195 - - conserved hypothetical protein [Ricinus communis]
19 Hb_015026_100 0.0915612542 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
20 Hb_000320_290 0.0922965656 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]

Gene co-expression network

sample Hb_001194_020 Hb_001194_020 Hb_008397_010 Hb_008397_010 Hb_001194_020--Hb_008397_010 Hb_000284_230 Hb_000284_230 Hb_001194_020--Hb_000284_230 Hb_000640_070 Hb_000640_070 Hb_001194_020--Hb_000640_070 Hb_073973_150 Hb_073973_150 Hb_001194_020--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_001194_020--Hb_006355_020 Hb_001059_130 Hb_001059_130 Hb_001194_020--Hb_001059_130 Hb_008397_010--Hb_000640_070 Hb_000336_020 Hb_000336_020 Hb_008397_010--Hb_000336_020 Hb_008397_010--Hb_000284_230 Hb_008397_010--Hb_073973_150 Hb_007894_160 Hb_007894_160 Hb_008397_010--Hb_007894_160 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_000284_230--Hb_073973_150 Hb_000284_230--Hb_006355_020 Hb_012215_010 Hb_012215_010 Hb_000640_070--Hb_012215_010 Hb_000640_070--Hb_073973_150 Hb_002784_030 Hb_002784_030 Hb_000640_070--Hb_002784_030 Hb_010272_010 Hb_010272_010 Hb_000640_070--Hb_010272_010 Hb_003104_040 Hb_003104_040 Hb_073973_150--Hb_003104_040 Hb_073973_150--Hb_002475_040 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_162275_040 Hb_162275_040 Hb_006355_020--Hb_162275_040 Hb_006355_020--Hb_001059_130 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440 Hb_001059_130--Hb_000284_230 Hb_000588_080 Hb_000588_080 Hb_001059_130--Hb_000588_080 Hb_001059_130--Hb_000358_100 Hb_000020_160 Hb_000020_160 Hb_001059_130--Hb_000020_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.78 16.6605 17.3795 21.3772 15.5184 17.1013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.37891 4.6618 4.56241 14.4637 20.327

CAGE analysis