Hb_000588_080

Information

Type -
Description -
Location Contig588: 89225-100826
Sequence    

Annotation

kegg
ID rcu:RCOM_1023810
description hypothetical protein
nr
ID XP_012077660.1
description PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12915 PE=4 SV=1
Gene Ontology
ID GO:0048731
description blister-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50014: 89528-91560 , PASA_asmbl_50015: 90700-91560 , PASA_asmbl_50018: 97075-97939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000588_080 0.0 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
2 Hb_010315_020 0.0715274172 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
3 Hb_001059_130 0.0770391597 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
4 Hb_000020_160 0.0772547955 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
5 Hb_000069_480 0.0811167062 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001194_020 0.0843407016 - - microtubule associated protein xmap215, putative [Ricinus communis]
7 Hb_044486_020 0.088905045 - - CASTOR protein [Glycine max]
8 Hb_001856_180 0.0889489805 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
9 Hb_001558_040 0.0906915956 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
10 Hb_001541_150 0.0908105853 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000320_290 0.0940817958 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
12 Hb_086063_020 0.0947174537 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
13 Hb_000230_130 0.0954805263 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 [Jatropha curcas]
14 Hb_000820_150 0.095707941 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
15 Hb_001241_010 0.0957922587 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000640_070 0.0959920736 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
17 Hb_000358_100 0.0961130077 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
18 Hb_000066_150 0.0979493656 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
19 Hb_002045_250 0.0980081463 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
20 Hb_092000_010 0.0981457893 - - kelch repeat-containing F-box family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000588_080 Hb_000588_080 Hb_010315_020 Hb_010315_020 Hb_000588_080--Hb_010315_020 Hb_001059_130 Hb_001059_130 Hb_000588_080--Hb_001059_130 Hb_000020_160 Hb_000020_160 Hb_000588_080--Hb_000020_160 Hb_000069_480 Hb_000069_480 Hb_000588_080--Hb_000069_480 Hb_001194_020 Hb_001194_020 Hb_000588_080--Hb_001194_020 Hb_044486_020 Hb_044486_020 Hb_000588_080--Hb_044486_020 Hb_000212_420 Hb_000212_420 Hb_010315_020--Hb_000212_420 Hb_000066_150 Hb_000066_150 Hb_010315_020--Hb_000066_150 Hb_008014_040 Hb_008014_040 Hb_010315_020--Hb_008014_040 Hb_001776_020 Hb_001776_020 Hb_010315_020--Hb_001776_020 Hb_010315_020--Hb_044486_020 Hb_000284_230 Hb_000284_230 Hb_001059_130--Hb_000284_230 Hb_001059_130--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_001059_130--Hb_000358_100 Hb_001059_130--Hb_000020_160 Hb_006355_020 Hb_006355_020 Hb_001059_130--Hb_006355_020 Hb_000020_160--Hb_000358_100 Hb_000358_220 Hb_000358_220 Hb_000020_160--Hb_000358_220 Hb_000020_160--Hb_044486_020 Hb_024650_080 Hb_024650_080 Hb_000020_160--Hb_024650_080 Hb_000172_340 Hb_000172_340 Hb_000020_160--Hb_000172_340 Hb_170077_010 Hb_170077_010 Hb_000020_160--Hb_170077_010 Hb_003912_040 Hb_003912_040 Hb_000069_480--Hb_003912_040 Hb_004128_130 Hb_004128_130 Hb_000069_480--Hb_004128_130 Hb_004429_010 Hb_004429_010 Hb_000069_480--Hb_004429_010 Hb_001489_100 Hb_001489_100 Hb_000069_480--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_000069_480--Hb_008253_020 Hb_000418_010 Hb_000418_010 Hb_000069_480--Hb_000418_010 Hb_008397_010 Hb_008397_010 Hb_001194_020--Hb_008397_010 Hb_001194_020--Hb_000284_230 Hb_000640_070 Hb_000640_070 Hb_001194_020--Hb_000640_070 Hb_073973_150 Hb_073973_150 Hb_001194_020--Hb_073973_150 Hb_001194_020--Hb_006355_020 Hb_000359_190 Hb_000359_190 Hb_044486_020--Hb_000359_190 Hb_001677_200 Hb_001677_200 Hb_044486_020--Hb_001677_200 Hb_000890_030 Hb_000890_030 Hb_044486_020--Hb_000890_030 Hb_086063_020 Hb_086063_020 Hb_044486_020--Hb_086063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35133 8.13564 6.91833 10.3138 4.61463 6.47312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28037 2.25483 1.71897 6.51464 8.29535

CAGE analysis