Hb_086063_020

Information

Type transcription factor
Description TF Family: SNF2
Location Contig86063: 6648-18402
Sequence    

Annotation

kegg
ID rcu:RCOM_1004020
description Chromatin remodelling complex ATPase chain isw-1, putative (EC:2.7.11.1)
nr
ID XP_012084223.1
description PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
swissprot
ID Q9NZC9
description SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Homo sapiens GN=SMARCAL1 PE=1 SV=1
trembl
ID A0A067K6X3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19100 PE=4 SV=1
Gene Ontology
ID GO:0003677
description swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60803: 6681-17152 , PASA_asmbl_60804: 7375-10749 , PASA_asmbl_60806: 7164-7343 , PASA_asmbl_60808: 17632-18298
cDNA
(Sanger)
(ID:Location)		 026_L17.ab1: 17976-18298

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086063_020 0.0 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
2 Hb_000215_300 0.0562697478 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
3 Hb_004037_020 0.0578406352 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
4 Hb_001405_210 0.0626085878 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
5 Hb_000258_110 0.0632853528 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
6 Hb_000702_090 0.0643974854 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
7 Hb_016172_030 0.0649938356 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
8 Hb_000085_450 0.0664841424 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
9 Hb_000345_160 0.0683370933 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
10 Hb_021165_010 0.073233359 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
11 Hb_060980_010 0.0734023274 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
12 Hb_004705_170 0.074579236 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
13 Hb_000954_010 0.0749898894 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
14 Hb_001856_180 0.0754658685 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
15 Hb_000049_020 0.0758536062 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
16 Hb_007248_030 0.0762598457 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
17 Hb_000046_570 0.0765505791 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
18 Hb_044486_020 0.0770487834 - - CASTOR protein [Glycine max]
19 Hb_000238_030 0.0781287553 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_002740_090 0.0783226511 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]

Gene co-expression network

sample Hb_086063_020 Hb_086063_020 Hb_000215_300 Hb_000215_300 Hb_086063_020--Hb_000215_300 Hb_004037_020 Hb_004037_020 Hb_086063_020--Hb_004037_020 Hb_001405_210 Hb_001405_210 Hb_086063_020--Hb_001405_210 Hb_000258_110 Hb_000258_110 Hb_086063_020--Hb_000258_110 Hb_000702_090 Hb_000702_090 Hb_086063_020--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_086063_020--Hb_016172_030 Hb_004705_170 Hb_004705_170 Hb_000215_300--Hb_004705_170 Hb_000345_160 Hb_000345_160 Hb_000215_300--Hb_000345_160 Hb_000215_300--Hb_000258_110 Hb_000215_300--Hb_004037_020 Hb_007472_070 Hb_007472_070 Hb_000215_300--Hb_007472_070 Hb_004037_020--Hb_016172_030 Hb_004037_020--Hb_000345_160 Hb_001481_060 Hb_001481_060 Hb_004037_020--Hb_001481_060 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004037_020--Hb_004705_170 Hb_007248_030 Hb_007248_030 Hb_001405_210--Hb_007248_030 Hb_000046_570 Hb_000046_570 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001856_180 Hb_001856_180 Hb_001405_210--Hb_001856_180 Hb_004586_060 Hb_004586_060 Hb_001405_210--Hb_004586_060 Hb_001141_310 Hb_001141_310 Hb_000258_110--Hb_001141_310 Hb_000836_460 Hb_000836_460 Hb_000258_110--Hb_000836_460 Hb_000238_030 Hb_000238_030 Hb_000258_110--Hb_000238_030 Hb_000258_110--Hb_004037_020 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_000702_090--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_000702_090--Hb_023313_040 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_000702_090--Hb_004586_060 Hb_000702_090--Hb_016172_030 Hb_060980_010 Hb_060980_010 Hb_016172_030--Hb_060980_010 Hb_016172_030--Hb_021165_010 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06725 6.83808 7.25335 10.44 5.56752 4.63821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.49126 4.14399 2.92389 7.71847 6.91917

CAGE analysis