Hb_000046_570

Information

Type -
Description -
Location Contig46: 416162-424620
Sequence    

Annotation

kegg
ID mtr:MTR_4g119400
description 5'-AMP-activated protein kinase subunit gamma
nr
ID KDP40000.1
description hypothetical protein JCGZ_01998 [Jatropha curcas]
swissprot
ID Q944A6
description Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1
trembl
ID A0A067L671
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01998 PE=4 SV=1
Gene Ontology
ID GO:0016301
description sucrose nonfermenting 4-like protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43665: 417039-417210 , PASA_asmbl_43666: 417880-418566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_570 0.0 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
2 Hb_007062_040 0.0497235565 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
3 Hb_004586_060 0.0539750326 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
4 Hb_007248_030 0.0590068272 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
5 Hb_000390_250 0.05902177 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
6 Hb_001405_210 0.059083803 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
7 Hb_003912_040 0.0605620312 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
8 Hb_005381_020 0.060929284 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
9 Hb_005460_050 0.0628106406 - - COR413-PM2, putative [Ricinus communis]
10 Hb_004128_130 0.0651837999 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
11 Hb_002492_010 0.0660014735 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
12 Hb_000009_400 0.0663798263 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
13 Hb_001856_180 0.0664133709 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
14 Hb_032990_010 0.0674936793 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
15 Hb_003929_170 0.0683634119 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
16 Hb_001366_090 0.0695478463 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
17 Hb_000635_040 0.0706785403 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
18 Hb_000345_160 0.0732220078 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
19 Hb_000313_220 0.073591266 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
20 Hb_001377_310 0.0741746022 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_570 Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_000046_570--Hb_007062_040 Hb_004586_060 Hb_004586_060 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_001405_210 Hb_001405_210 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_007062_040--Hb_004586_060 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_007062_040--Hb_001405_210 Hb_005460_050 Hb_005460_050 Hb_007062_040--Hb_005460_050 Hb_004586_060--Hb_007248_030 Hb_001377_310 Hb_001377_310 Hb_004586_060--Hb_001377_310 Hb_000702_090 Hb_000702_090 Hb_004586_060--Hb_000702_090 Hb_004586_060--Hb_005460_050 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_007248_030--Hb_001405_210 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_007248_030--Hb_001856_180 Hb_000329_230 Hb_000329_230 Hb_000390_250--Hb_000329_230 Hb_001863_360 Hb_001863_360 Hb_000390_250--Hb_001863_360 Hb_005381_020 Hb_005381_020 Hb_000390_250--Hb_005381_020 Hb_003929_170 Hb_003929_170 Hb_000390_250--Hb_003929_170 Hb_001366_090 Hb_001366_090 Hb_000390_250--Hb_001366_090 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_001405_210--Hb_004586_060 Hb_000069_130 Hb_000069_130 Hb_003912_040--Hb_000069_130 Hb_002492_010 Hb_002492_010 Hb_003912_040--Hb_002492_010 Hb_003912_040--Hb_007062_040 Hb_008226_090 Hb_008226_090 Hb_003912_040--Hb_008226_090 Hb_000120_910 Hb_000120_910 Hb_003912_040--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.85259 9.15224 8.79506 11.8455 6.00866 7.0938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.18118 5.32196 4.40334 6.49224 6.06255

CAGE analysis