Hb_000702_090

Information

Type -
Description -
Location Contig702: 139945-147003
Sequence    

Annotation

kegg
ID tcc:TCM_011635
description 26S proteasome non-ATPase regulatory subunit 11
nr
ID XP_007045996.1
description 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
swissprot
ID Q9LP45
description 26S proteasome non-ATPase regulatory subunit 11 homolog OS=Arabidopsis thaliana GN=RPN6 PE=1 SV=1
trembl
ID A0A061EB23
description 26S proteasome non-ATPase regulatory subunit 11 OS=Theobroma cacao GN=TCM_011635 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 11 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54903: 139494-146565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000702_090 0.0 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
2 Hb_021165_010 0.0414976166 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
3 Hb_007248_030 0.0539331445 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
4 Hb_023313_040 0.0567689487 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
5 Hb_000085_170 0.0573949391 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
6 Hb_004586_060 0.0615995543 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
7 Hb_016172_030 0.0616635273 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
8 Hb_033312_040 0.0631006681 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
9 Hb_086063_020 0.0643974854 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
10 Hb_001856_180 0.0652768075 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
11 Hb_060980_010 0.065407716 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
12 Hb_000477_050 0.0659677489 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
13 Hb_002014_010 0.0661244097 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_000954_010 0.0664740732 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
15 Hb_006189_020 0.0674738964 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
16 Hb_001405_210 0.0681157476 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
17 Hb_000803_270 0.0681936574 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
18 Hb_004109_320 0.0682070328 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
19 Hb_000336_020 0.0688338993 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
20 Hb_000019_190 0.0690755731 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]

Gene co-expression network

sample Hb_000702_090 Hb_000702_090 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_007248_030 Hb_007248_030 Hb_000702_090--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_000702_090--Hb_023313_040 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_004586_060 Hb_004586_060 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_021165_010--Hb_016172_030 Hb_008289_040 Hb_008289_040 Hb_021165_010--Hb_008289_040 Hb_000017_230 Hb_000017_230 Hb_021165_010--Hb_000017_230 Hb_060980_010 Hb_060980_010 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110 Hb_007248_030--Hb_004586_060 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_001405_210 Hb_001405_210 Hb_007248_030--Hb_001405_210 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_001856_180 Hb_001856_180 Hb_007248_030--Hb_001856_180 Hb_000019_190 Hb_000019_190 Hb_023313_040--Hb_000019_190 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_000006_010 Hb_000006_010 Hb_023313_040--Hb_000006_010 Hb_000510_360 Hb_000510_360 Hb_000085_170--Hb_000510_360 Hb_000321_140 Hb_000321_140 Hb_000085_170--Hb_000321_140 Hb_012506_030 Hb_012506_030 Hb_000085_170--Hb_012506_030 Hb_033312_040 Hb_033312_040 Hb_000085_170--Hb_033312_040 Hb_002326_110 Hb_002326_110 Hb_000085_170--Hb_002326_110 Hb_007062_040 Hb_007062_040 Hb_004586_060--Hb_007062_040 Hb_000046_570 Hb_000046_570 Hb_004586_060--Hb_000046_570 Hb_001377_310 Hb_001377_310 Hb_004586_060--Hb_001377_310 Hb_005460_050 Hb_005460_050 Hb_004586_060--Hb_005460_050 Hb_016172_030--Hb_060980_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6712 21.5419 30.04 28.9881 17.0724 16.2307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9383 13.0685 12.2794 24.2983 20.3756

CAGE analysis