Hb_002014_010

Information

Type -
Description -
Location Contig2014: 24203-29305
Sequence    

Annotation

kegg
ID tcc:TCM_037862
description Uncharacterized protein isoform 1
nr
ID XP_007013145.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID F4IUE7
description Protein CONTINUOUS VASCULAR RING 1 OS=Arabidopsis thaliana GN=COV1 PE=1 SV=2
trembl
ID A0A061GUH3
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_037862 PE=4 SV=1
Gene Ontology
ID GO:0003746
description protein continuous vascular ring 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20445: 24005-29333 , PASA_asmbl_20446: 24005-24895 , PASA_asmbl_20447: 24005-24856 , PASA_asmbl_20448: 24963-29341
cDNA
(Sanger)
(ID:Location)		 004_M06.ab1: 24122-28406 , 007_O04.ab1: 24005-24894 , 017_M21.ab1: 24005-24720 , 021_M07.ab1: 24005-24778 , 046_P03.ab1: 24005-24895 , 049_E13.ab1: 24020-24279

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_010 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_000019_190 0.0529711941 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
3 Hb_007248_030 0.0562058002 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
4 Hb_004109_320 0.0565133033 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
5 Hb_171900_090 0.06355348 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000702_090 0.0661244097 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
7 Hb_000365_230 0.0666238059 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
8 Hb_004586_060 0.0668537074 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
9 Hb_012092_050 0.0686728324 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
10 Hb_000513_090 0.0690749072 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
11 Hb_000803_270 0.0692425407 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
12 Hb_001221_440 0.0692508141 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
13 Hb_010775_030 0.0695024777 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
14 Hb_164390_010 0.0710995689 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
15 Hb_163175_010 0.0712818789 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
16 Hb_023313_040 0.0759034202 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
17 Hb_001720_040 0.076980284 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001405_210 0.0770593651 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
19 Hb_007894_150 0.0774208664 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
20 Hb_001357_310 0.0781049375 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002014_010 Hb_002014_010 Hb_000019_190 Hb_000019_190 Hb_002014_010--Hb_000019_190 Hb_007248_030 Hb_007248_030 Hb_002014_010--Hb_007248_030 Hb_004109_320 Hb_004109_320 Hb_002014_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_002014_010--Hb_171900_090 Hb_000702_090 Hb_000702_090 Hb_002014_010--Hb_000702_090 Hb_000365_230 Hb_000365_230 Hb_002014_010--Hb_000365_230 Hb_023313_040 Hb_023313_040 Hb_000019_190--Hb_023313_040 Hb_001227_120 Hb_001227_120 Hb_000019_190--Hb_001227_120 Hb_007007_040 Hb_007007_040 Hb_000019_190--Hb_007007_040 Hb_000019_190--Hb_007248_030 Hb_163175_010 Hb_163175_010 Hb_000019_190--Hb_163175_010 Hb_004586_060 Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_001405_210 Hb_001405_210 Hb_007248_030--Hb_001405_210 Hb_007248_030--Hb_000702_090 Hb_001856_180 Hb_001856_180 Hb_007248_030--Hb_001856_180 Hb_007894_150 Hb_007894_150 Hb_004109_320--Hb_007894_150 Hb_004109_320--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_004109_320--Hb_164390_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000477_050 Hb_000477_050 Hb_004109_320--Hb_000477_050 Hb_000789_320 Hb_000789_320 Hb_171900_090--Hb_000789_320 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_171900_090--Hb_001025_090 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_000702_090--Hb_023313_040 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_000365_230--Hb_164390_010 Hb_000365_230--Hb_007894_150 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5201 21.347 28.1775 23.8416 15.5378 14.8211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0793 19.3654 11.7727 21.4407 15.4886

CAGE analysis