Hb_007894_150

Information

Type -
Description -
Location Contig7894: 124724-129680
Sequence    

Annotation

kegg
ID mdm:103413135
description polyadenylate-binding protein RBP45-like
nr
ID KCW70174.1
description hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
swissprot
ID Q9LEB4
description Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1
trembl
ID A0A059BW09
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03462 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein rbp45c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58274: 124684-129669 , PASA_asmbl_58275: 125123-129669 , PASA_asmbl_58276: 128819-129169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_150 0.0 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
2 Hb_004109_320 0.0495997199 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
3 Hb_164390_010 0.0513838038 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
4 Hb_000365_230 0.0539807379 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
5 Hb_006189_020 0.0597383393 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_005000_170 0.0605085095 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
7 Hb_001226_150 0.0628073881 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
8 Hb_033312_040 0.0645534508 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
9 Hb_003098_070 0.0651907757 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
10 Hb_001124_130 0.0652837293 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
11 Hb_003861_060 0.0658456368 - - PREDICTED: treacle protein [Jatropha curcas]
12 Hb_018790_020 0.0659034785 - - protein kinase, putative [Ricinus communis]
13 Hb_002007_080 0.0662443583 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
14 Hb_000363_310 0.0663675906 - - DNA topoisomerase type I, putative [Ricinus communis]
15 Hb_000778_010 0.067864946 - - hypothetical protein [Bacillus subtilis]
16 Hb_000510_360 0.0698193804 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
17 Hb_183510_020 0.0699077608 - - coated vesicle membrane protein, putative [Ricinus communis]
18 Hb_000359_040 0.0702376325 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001025_120 0.0705988873 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
20 Hb_012506_030 0.0708701018 - - AP-2 complex subunit alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_007894_150 Hb_007894_150 Hb_004109_320 Hb_004109_320 Hb_007894_150--Hb_004109_320 Hb_164390_010 Hb_164390_010 Hb_007894_150--Hb_164390_010 Hb_000365_230 Hb_000365_230 Hb_007894_150--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_007894_150--Hb_006189_020 Hb_005000_170 Hb_005000_170 Hb_007894_150--Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_007894_150--Hb_001226_150 Hb_004109_320--Hb_000365_230 Hb_004109_320--Hb_164390_010 Hb_002014_010 Hb_002014_010 Hb_004109_320--Hb_002014_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000477_050 Hb_000477_050 Hb_004109_320--Hb_000477_050 Hb_164390_010--Hb_000365_230 Hb_163175_010 Hb_163175_010 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_171900_090 Hb_171900_090 Hb_164390_010--Hb_171900_090 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010 Hb_033312_040 Hb_033312_040 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_006189_020--Hb_000510_360 Hb_000139_080 Hb_000139_080 Hb_006189_020--Hb_000139_080 Hb_005000_170--Hb_001226_150 Hb_000329_800 Hb_000329_800 Hb_005000_170--Hb_000329_800 Hb_004846_220 Hb_004846_220 Hb_005000_170--Hb_004846_220 Hb_002592_060 Hb_002592_060 Hb_005000_170--Hb_002592_060 Hb_000441_220 Hb_000441_220 Hb_005000_170--Hb_000441_220 Hb_170416_010 Hb_170416_010 Hb_001226_150--Hb_170416_010 Hb_005867_070 Hb_005867_070 Hb_001226_150--Hb_005867_070 Hb_000339_040 Hb_000339_040 Hb_001226_150--Hb_000339_040 Hb_007007_120 Hb_007007_120 Hb_001226_150--Hb_007007_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4978 28.9975 45.086 29.4957 22.7532 22.7438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4814 27.161 25.9753 34.9224 31.1792

CAGE analysis