Hb_000139_080

Information

Type -
Description -
Location Contig139: 108440-114381
Sequence    

Annotation

kegg
ID rcu:RCOM_0677740
description vacuole membrane protein, putative
nr
ID XP_012069605.1
description PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
swissprot
ID Q5XF36
description Vacuole membrane protein KMS1 OS=Arabidopsis thaliana GN=KMS1 PE=1 SV=1
trembl
ID A0A067KVI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02155 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10618: 108504-114382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_080 0.0 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
2 Hb_003098_070 0.0472905079 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
3 Hb_033312_040 0.0540352996 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
4 Hb_000078_140 0.0554180329 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
5 Hb_006189_020 0.0556902888 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_003626_070 0.0611883971 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
7 Hb_000169_020 0.0624171231 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
8 Hb_001817_170 0.0634234489 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
9 Hb_006100_020 0.0637918026 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
10 Hb_073171_070 0.0653983494 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
11 Hb_006913_020 0.0659586421 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
12 Hb_007413_010 0.0659820375 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
13 Hb_000703_190 0.0668076646 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
14 Hb_002006_150 0.0668278567 - - copine, putative [Ricinus communis]
15 Hb_002042_050 0.067028824 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
16 Hb_004324_360 0.0674671503 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
17 Hb_000773_040 0.0676148088 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
18 Hb_003581_200 0.067990241 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
19 Hb_006824_010 0.0685884912 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
20 Hb_003498_080 0.0693344103 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_080 Hb_000139_080 Hb_003098_070 Hb_003098_070 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000078_140 Hb_000078_140 Hb_000139_080--Hb_000078_140 Hb_006189_020 Hb_006189_020 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_003098_070--Hb_006189_020 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_003098_070--Hb_000078_140 Hb_033312_040--Hb_006189_020 Hb_000510_360 Hb_000510_360 Hb_033312_040--Hb_000510_360 Hb_001481_060 Hb_001481_060 Hb_033312_040--Hb_001481_060 Hb_004333_040 Hb_004333_040 Hb_033312_040--Hb_004333_040 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_006189_020--Hb_000510_360 Hb_003626_070--Hb_001817_170 Hb_001635_110 Hb_001635_110 Hb_003626_070--Hb_001635_110 Hb_003626_070--Hb_006189_020 Hb_003626_070--Hb_000476_060 Hb_000103_290 Hb_000103_290 Hb_003626_070--Hb_000103_290 Hb_000340_040 Hb_000340_040 Hb_000169_020--Hb_000340_040 Hb_006100_020 Hb_006100_020 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.04192 14.7247 19.2692 20.1184 8.28368 10.1063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8264 9.67483 10.6836 14.6401 20.1458

CAGE analysis