Hb_001635_110

Information

Type -
Description -
Location Contig1635: 88335-96494
Sequence    

Annotation

kegg
ID rcu:RCOM_1485390
description glutamate dehydrogenase, putative (EC:1.4.1.4)
nr
ID XP_012069020.1
description PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
swissprot
ID P28724
description NADP-specific glutamate dehydrogenase OS=Giardia intestinalis PE=2 SV=1
trembl
ID B9RQ63
description Glutamate dehydrogenase, putative OS=Ricinus communis GN=RCOM_1485390 PE=3 SV=1
Gene Ontology
ID GO:0004354
description nadp-specific glutamate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14942: 88239-96384 , PASA_asmbl_14943: 92103-92345 , PASA_asmbl_14944: 93836-96424 , PASA_asmbl_14945: 88276-89765 , PASA_asmbl_14946: 90554-96224
cDNA
(Sanger)
(ID:Location)		 005_F15.ab1: 88244-89893 , 042_H06.ab1: 88244-89898 , 047_O05.ab1: 88244-89791

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_110 0.0 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
2 Hb_178968_060 0.0486705232 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
3 Hb_008304_020 0.0536437042 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
4 Hb_000173_190 0.0568001507 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001300_280 0.0593157288 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
6 Hb_006189_020 0.0603939197 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_003098_070 0.0607594911 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
8 Hb_003626_070 0.0614821482 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
9 Hb_000476_060 0.0624152458 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
10 Hb_006100_020 0.0661049911 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_001221_440 0.0689155823 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
12 Hb_004109_320 0.0710070077 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
13 Hb_012092_050 0.0730969566 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
14 Hb_001504_010 0.0733483181 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
15 Hb_001817_170 0.0736647863 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
16 Hb_033312_040 0.0741830272 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
17 Hb_000139_080 0.0746469675 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
18 Hb_003498_100 0.0749364684 - - component of oligomeric golgi complex, putative [Ricinus communis]
19 Hb_000120_890 0.0759572728 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
20 Hb_000702_090 0.0770701822 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]

Gene co-expression network

sample Hb_001635_110 Hb_001635_110 Hb_178968_060 Hb_178968_060 Hb_001635_110--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_001635_110--Hb_008304_020 Hb_000173_190 Hb_000173_190 Hb_001635_110--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_001635_110--Hb_001300_280 Hb_006189_020 Hb_006189_020 Hb_001635_110--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_001635_110--Hb_003098_070 Hb_000230_460 Hb_000230_460 Hb_178968_060--Hb_000230_460 Hb_178968_060--Hb_001300_280 Hb_003498_100 Hb_003498_100 Hb_178968_060--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_178968_060--Hb_000120_890 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440 Hb_008304_020--Hb_006189_020 Hb_008304_020--Hb_003098_070 Hb_007483_070 Hb_007483_070 Hb_008304_020--Hb_007483_070 Hb_001504_010 Hb_001504_010 Hb_008304_020--Hb_001504_010 Hb_159809_070 Hb_159809_070 Hb_008304_020--Hb_159809_070 Hb_006100_020 Hb_006100_020 Hb_000173_190--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000173_190--Hb_000318_150 Hb_000173_190--Hb_001300_280 Hb_000035_100 Hb_000035_100 Hb_000173_190--Hb_000035_100 Hb_000960_080 Hb_000960_080 Hb_000173_190--Hb_000960_080 Hb_003636_080 Hb_003636_080 Hb_001300_280--Hb_003636_080 Hb_006588_060 Hb_006588_060 Hb_001300_280--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_001300_280--Hb_012092_050 Hb_033312_040 Hb_033312_040 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_006189_020--Hb_000510_360 Hb_000139_080 Hb_000139_080 Hb_006189_020--Hb_000139_080 Hb_003098_070--Hb_000139_080 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_003098_070--Hb_006189_020 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_000078_140 Hb_000078_140 Hb_003098_070--Hb_000078_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22577 10.1374 14.0039 10.9882 6.26383 4.4234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.56025 7.57234 5.12427 10.2389 10.9485

CAGE analysis