Hb_000476_060

Information

Type -
Description -
Location Contig476: 117891-127152
Sequence    

Annotation

kegg
ID tcc:TCM_041189
description Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1
nr
ID XP_007015617.1
description Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID B7ZWR6
description Outer envelope protein 61 OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1
trembl
ID A0A061GUU0
description Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_041189 PE=4 SV=1
Gene Ontology
ID GO:0044444
description outer envelope protein 61-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44502: 117942-127067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000476_060 0.0 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
2 Hb_003098_070 0.0590737322 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
3 Hb_089839_010 0.0611140052 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
4 Hb_001635_110 0.0624152458 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
5 Hb_000788_030 0.0642145579 - - PREDICTED: dynamin-2A [Jatropha curcas]
6 Hb_004324_360 0.0654919558 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
7 Hb_000120_890 0.0694414077 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
8 Hb_000703_190 0.0711308881 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
9 Hb_000089_210 0.0711337879 - - unknown [Medicago truncatula]
10 Hb_003626_070 0.0713807118 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
11 Hb_000139_080 0.0714780906 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
12 Hb_033312_040 0.0722015747 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
13 Hb_000975_210 0.0722767419 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
14 Hb_000085_170 0.0724008017 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
15 Hb_002716_060 0.072877974 - - carboxylesterase np, putative [Ricinus communis]
16 Hb_003758_010 0.0730296825 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
17 Hb_000510_360 0.0732235211 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
18 Hb_001817_170 0.0746780216 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
19 Hb_001703_040 0.0747599085 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
20 Hb_003498_100 0.0756125368 - - component of oligomeric golgi complex, putative [Ricinus communis]

Gene co-expression network

sample Hb_000476_060 Hb_000476_060 Hb_003098_070 Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000788_030 Hb_000788_030 Hb_000476_060--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_000476_060--Hb_004324_360 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_000139_080 Hb_000139_080 Hb_003098_070--Hb_000139_080 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_003098_070--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_003098_070--Hb_033312_040 Hb_000078_140 Hb_000078_140 Hb_003098_070--Hb_000078_140 Hb_003498_100 Hb_003498_100 Hb_089839_010--Hb_003498_100 Hb_000703_190 Hb_000703_190 Hb_089839_010--Hb_000703_190 Hb_018790_020 Hb_018790_020 Hb_089839_010--Hb_018790_020 Hb_000089_210 Hb_000089_210 Hb_089839_010--Hb_000089_210 Hb_089839_010--Hb_003098_070 Hb_178968_060 Hb_178968_060 Hb_001635_110--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_001635_110--Hb_008304_020 Hb_000173_190 Hb_000173_190 Hb_001635_110--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_001635_110--Hb_001300_280 Hb_001635_110--Hb_006189_020 Hb_001635_110--Hb_003098_070 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_000788_030--Hb_004324_360 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_002684_020 Hb_002684_020 Hb_000788_030--Hb_002684_020 Hb_006846_170 Hb_006846_170 Hb_000788_030--Hb_006846_170 Hb_004324_360--Hb_002684_020 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_004324_360--Hb_033312_040 Hb_000120_890--Hb_003498_100 Hb_001504_010 Hb_001504_010 Hb_000120_890--Hb_001504_010 Hb_000120_890--Hb_178968_060 Hb_000120_890--Hb_008304_020 Hb_000120_890--Hb_018790_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.43364 10.2107 15.6196 10.9384 5.09859 4.75832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3514 5.82869 7.15719 8.48417 10.2774

CAGE analysis