Hb_003498_100

Information

Type -
Description -
Location Contig3498: 172383-179978
Sequence    

Annotation

kegg
ID rcu:RCOM_0867860
description component of oligomeric golgi complex, putative
nr
ID XP_002519941.1
description component of oligomeric golgi complex, putative [Ricinus communis]
swissprot
ID Q3SZI7
description Conserved oligomeric Golgi complex subunit 6 OS=Bos taurus GN=COG6 PE=2 SV=1
trembl
ID B9S1S6
description Component of oligomeric golgi complex, putative OS=Ricinus communis GN=RCOM_0867860 PE=4 SV=1
Gene Ontology
ID GO:0005829
description conserved oligomeric golgi complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36379: 174650-176637 , PASA_asmbl_36380: 172482-179874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003498_100 0.0 - - component of oligomeric golgi complex, putative [Ricinus communis]
2 Hb_000120_890 0.0474396837 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
3 Hb_178968_060 0.064709908 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
4 Hb_089839_010 0.0678324188 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
5 Hb_001279_190 0.067838744 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
6 Hb_000703_190 0.0732736212 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
7 Hb_001799_160 0.0734837999 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_001504_010 0.0749152171 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
9 Hb_001635_110 0.0749364684 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
10 Hb_000476_060 0.0756125368 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
11 Hb_007483_070 0.0756660114 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
12 Hb_081599_010 0.0794471328 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001703_040 0.0819312648 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
14 Hb_018790_020 0.0825182566 - - protein kinase, putative [Ricinus communis]
15 Hb_000815_300 0.0835861077 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
16 Hb_008304_020 0.0841268751 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
17 Hb_003098_070 0.084240307 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
18 Hb_002740_080 0.0867530749 - - flap endonuclease-1, putative [Ricinus communis]
19 Hb_000788_030 0.0892729098 - - PREDICTED: dynamin-2A [Jatropha curcas]
20 Hb_011716_010 0.0895704645 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_003498_100 Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_003498_100--Hb_000120_890 Hb_178968_060 Hb_178968_060 Hb_003498_100--Hb_178968_060 Hb_089839_010 Hb_089839_010 Hb_003498_100--Hb_089839_010 Hb_001279_190 Hb_001279_190 Hb_003498_100--Hb_001279_190 Hb_000703_190 Hb_000703_190 Hb_003498_100--Hb_000703_190 Hb_001799_160 Hb_001799_160 Hb_003498_100--Hb_001799_160 Hb_000476_060 Hb_000476_060 Hb_000120_890--Hb_000476_060 Hb_001504_010 Hb_001504_010 Hb_000120_890--Hb_001504_010 Hb_000120_890--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_000120_890--Hb_008304_020 Hb_018790_020 Hb_018790_020 Hb_000120_890--Hb_018790_020 Hb_001635_110 Hb_001635_110 Hb_178968_060--Hb_001635_110 Hb_000230_460 Hb_000230_460 Hb_178968_060--Hb_000230_460 Hb_001300_280 Hb_001300_280 Hb_178968_060--Hb_001300_280 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440 Hb_089839_010--Hb_000476_060 Hb_089839_010--Hb_000703_190 Hb_089839_010--Hb_018790_020 Hb_000089_210 Hb_000089_210 Hb_089839_010--Hb_000089_210 Hb_003098_070 Hb_003098_070 Hb_089839_010--Hb_003098_070 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_002687_180 Hb_002687_180 Hb_001279_190--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_001279_190--Hb_004228_120 Hb_011716_010 Hb_011716_010 Hb_001279_190--Hb_011716_010 Hb_001250_050 Hb_001250_050 Hb_001279_190--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_001279_190--Hb_001227_120 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_000317_040 Hb_000317_040 Hb_000703_190--Hb_000317_040 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_000318_220 Hb_000318_220 Hb_001799_160--Hb_000318_220 Hb_001799_160--Hb_000120_890 Hb_001799_160--Hb_001504_010 Hb_001799_160--Hb_007483_070 Hb_001053_190 Hb_001053_190 Hb_001799_160--Hb_001053_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95936 12.0997 24.1605 19.9313 8.37326 5.55538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.83322 12.2125 9.31845 12.1605 14.3692

CAGE analysis