Hb_001053_190

Information

Type -
Description -
Location Contig1053: 142647-146404
Sequence    

Annotation

kegg
ID rcu:RCOM_0404010
description ADP,ATP carrier protein, putative
nr
ID XP_002531911.1
description ADP,ATP carrier protein, putative [Ricinus communis]
swissprot
ID O22342
description ADP,ATP carrier protein 1, mitochondrial OS=Gossypium hirsutum GN=ANT1 PE=2 SV=1
trembl
ID B9T0Z2
description ADP,ATP carrier protein, putative OS=Ricinus communis GN=RCOM_0404010 PE=3 SV=1
Gene Ontology
ID GO:0005743
description carrier protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01798: 142726-146198
cDNA
(Sanger)
(ID:Location)		 009_J17.ab1: 143905-146198 , 023_I08.ab1: 143942-146198

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_190 0.0 - - ADP,ATP carrier protein, putative [Ricinus communis]
2 Hb_002686_080 0.0651232801 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
3 Hb_003540_050 0.0796957854 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
4 Hb_000724_020 0.0814151734 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
5 Hb_000029_400 0.0824728465 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
6 Hb_000318_220 0.0828550005 - - conserved hypothetical protein [Ricinus communis]
7 Hb_016448_010 0.0830963778 - - Protein MYG1, putative [Ricinus communis]
8 Hb_001799_160 0.0831043662 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_001504_010 0.0835721297 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
10 Hb_007483_070 0.0867013481 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
11 Hb_000579_080 0.0887908036 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
12 Hb_003506_030 0.091091348 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000739_240 0.091866903 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
14 Hb_012438_030 0.0942945812 - - PREDICTED: protein sym-1 [Jatropha curcas]
15 Hb_000072_300 0.0948211333 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
16 Hb_002684_020 0.0948578787 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
17 Hb_000163_260 0.0969327323 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
18 Hb_000913_030 0.0971697596 - - nuclease, putative [Ricinus communis]
19 Hb_009476_130 0.0977434755 - - hypothetical protein VITISV_005430 [Vitis vinifera]
20 Hb_004712_190 0.1002526465 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]

Gene co-expression network

sample Hb_001053_190 Hb_001053_190 Hb_002686_080 Hb_002686_080 Hb_001053_190--Hb_002686_080 Hb_003540_050 Hb_003540_050 Hb_001053_190--Hb_003540_050 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_000318_220 Hb_000318_220 Hb_001053_190--Hb_000318_220 Hb_016448_010 Hb_016448_010 Hb_001053_190--Hb_016448_010 Hb_002686_080--Hb_003540_050 Hb_000163_260 Hb_000163_260 Hb_002686_080--Hb_000163_260 Hb_000890_130 Hb_000890_130 Hb_002686_080--Hb_000890_130 Hb_002686_080--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_002686_080--Hb_003506_030 Hb_000072_300 Hb_000072_300 Hb_003540_050--Hb_000072_300 Hb_005064_010 Hb_005064_010 Hb_003540_050--Hb_005064_010 Hb_001279_190 Hb_001279_190 Hb_003540_050--Hb_001279_190 Hb_002740_080 Hb_002740_080 Hb_003540_050--Hb_002740_080 Hb_004032_370 Hb_004032_370 Hb_000724_020--Hb_004032_370 Hb_004109_120 Hb_004109_120 Hb_000724_020--Hb_004109_120 Hb_004096_060 Hb_004096_060 Hb_000724_020--Hb_004096_060 Hb_003228_100 Hb_003228_100 Hb_000724_020--Hb_003228_100 Hb_000579_080 Hb_000579_080 Hb_000724_020--Hb_000579_080 Hb_001504_010 Hb_001504_010 Hb_000029_400--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_000029_400--Hb_007483_070 Hb_001882_010 Hb_001882_010 Hb_000029_400--Hb_001882_010 Hb_000029_400--Hb_000163_260 Hb_000926_060 Hb_000926_060 Hb_000029_400--Hb_000926_060 Hb_000327_330 Hb_000327_330 Hb_000318_220--Hb_000327_330 Hb_001799_160 Hb_001799_160 Hb_000318_220--Hb_001799_160 Hb_003883_010 Hb_003883_010 Hb_000318_220--Hb_003883_010 Hb_002218_020 Hb_002218_020 Hb_000318_220--Hb_002218_020 Hb_000318_220--Hb_001504_010 Hb_016448_010--Hb_003506_030 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_012438_030 Hb_012438_030 Hb_016448_010--Hb_012438_030 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.4192 44.2997 136.082 94.2612 34.5456 26.9352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.1247 29.1646 33.9029 53.7033 72.6729

CAGE analysis