Hb_003506_030

Information

Type -
Description -
Location Contig3506: 56613-67886
Sequence    

Annotation

kegg
ID rcu:RCOM_1242470
description ATP-dependent clp protease ATP-binding subunit clpx, putative
nr
ID XP_012086322.1
description PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q92QQ2
description ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium meliloti (strain 1021) GN=clpX PE=3 SV=1
trembl
ID A0A067JPT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23723 PE=4 SV=1
Gene Ontology
ID GO:0005524
description atp-dependent clp protease atp-binding subunit clpx- mitochondrial isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36500: 56791-67786 , PASA_asmbl_36501: 56791-60513 , PASA_asmbl_36502: 64141-64438 , PASA_asmbl_36504: 61590-61701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003506_030 0.0 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_016448_010 0.0697396722 - - Protein MYG1, putative [Ricinus communis]
3 Hb_000089_210 0.0705074812 - - unknown [Medicago truncatula]
4 Hb_029695_080 0.0769920366 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
5 Hb_087313_010 0.0791264224 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004531_150 0.0793584179 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
7 Hb_000958_080 0.0811357675 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000663_020 0.081278431 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
9 Hb_002686_080 0.0817896337 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
10 Hb_003470_040 0.0818848883 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
11 Hb_002249_020 0.0827012513 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
12 Hb_001824_030 0.0837837533 - - plant sec1, putative [Ricinus communis]
13 Hb_001504_010 0.0843292074 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
14 Hb_005649_100 0.0843558277 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
15 Hb_000207_200 0.0877090269 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
16 Hb_003228_100 0.0879855691 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
17 Hb_000318_220 0.0884857359 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003449_100 0.0885166544 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
19 Hb_001053_190 0.091091348 - - ADP,ATP carrier protein, putative [Ricinus communis]
20 Hb_002218_020 0.0926412152 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_003506_030 Hb_003506_030 Hb_016448_010 Hb_016448_010 Hb_003506_030--Hb_016448_010 Hb_000089_210 Hb_000089_210 Hb_003506_030--Hb_000089_210 Hb_029695_080 Hb_029695_080 Hb_003506_030--Hb_029695_080 Hb_087313_010 Hb_087313_010 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_012438_030 Hb_012438_030 Hb_016448_010--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000207_200 Hb_000207_200 Hb_000089_210--Hb_000207_200 Hb_002909_040 Hb_002909_040 Hb_000089_210--Hb_002909_040 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_004096_160 Hb_004096_160 Hb_000089_210--Hb_004096_160 Hb_003470_040 Hb_003470_040 Hb_029695_080--Hb_003470_040 Hb_029695_080--Hb_000207_200 Hb_033642_120 Hb_033642_120 Hb_029695_080--Hb_033642_120 Hb_029695_080--Hb_002909_040 Hb_001221_440 Hb_001221_440 Hb_029695_080--Hb_001221_440 Hb_087313_010--Hb_012438_030 Hb_002218_020 Hb_002218_020 Hb_087313_010--Hb_002218_020 Hb_001703_040 Hb_001703_040 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_102948_010 Hb_102948_010 Hb_087313_010--Hb_102948_010 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_004531_150--Hb_001504_010 Hb_005305_100 Hb_005305_100 Hb_004531_150--Hb_005305_100 Hb_006261_050 Hb_006261_050 Hb_004531_150--Hb_006261_050 Hb_001541_150 Hb_001541_150 Hb_004531_150--Hb_001541_150 Hb_004531_150--Hb_021596_020 Hb_000958_080--Hb_004096_160 Hb_009449_060 Hb_009449_060 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000958_080--Hb_000089_210 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42262 10.8642 22.7984 14.5037 8.55434 6.36599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.63988 7.09423 4.24977 7.5145 11.6946

CAGE analysis