Hb_001541_150

Information

Type -
Description -
Location Contig1541: 144481-146169
Sequence    

Annotation

kegg
ID rcu:RCOM_0793910
description hypothetical protein
nr
ID XP_002530039.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0793910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13288: 145620-145964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000300_030 0.0632315398 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
3 Hb_004531_100 0.0643222024 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
4 Hb_006663_060 0.0713733981 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
5 Hb_000270_190 0.0763461682 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
6 Hb_022250_010 0.0779160462 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
7 Hb_000336_020 0.0808259997 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
8 Hb_006210_010 0.0810063487 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
9 Hb_000358_220 0.0816770638 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
10 Hb_004531_150 0.081688905 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
11 Hb_048476_080 0.082065884 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
12 Hb_005214_140 0.0823396147 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
13 Hb_010315_020 0.0824714654 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
14 Hb_001008_130 0.0827841082 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
15 Hb_000103_290 0.0831767292 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
16 Hb_011457_140 0.0835882664 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
17 Hb_005305_100 0.0842729271 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_024650_080 0.0861142527 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
19 Hb_000020_160 0.0875950057 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
20 Hb_033312_130 0.0883463182 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001541_150 Hb_001541_150 Hb_000300_030 Hb_000300_030 Hb_001541_150--Hb_000300_030 Hb_004531_100 Hb_004531_100 Hb_001541_150--Hb_004531_100 Hb_006663_060 Hb_006663_060 Hb_001541_150--Hb_006663_060 Hb_000270_190 Hb_000270_190 Hb_001541_150--Hb_000270_190 Hb_022250_010 Hb_022250_010 Hb_001541_150--Hb_022250_010 Hb_000336_020 Hb_000336_020 Hb_001541_150--Hb_000336_020 Hb_003661_010 Hb_003661_010 Hb_000300_030--Hb_003661_010 Hb_005305_100 Hb_005305_100 Hb_000300_030--Hb_005305_100 Hb_001414_010 Hb_001414_010 Hb_000300_030--Hb_001414_010 Hb_011457_140 Hb_011457_140 Hb_000300_030--Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_000300_030--Hb_000358_220 Hb_001776_020 Hb_001776_020 Hb_004531_100--Hb_001776_020 Hb_010315_020 Hb_010315_020 Hb_004531_100--Hb_010315_020 Hb_002883_030 Hb_002883_030 Hb_004531_100--Hb_002883_030 Hb_004531_100--Hb_000336_020 Hb_000212_120 Hb_000212_120 Hb_004531_100--Hb_000212_120 Hb_009288_020 Hb_009288_020 Hb_006663_060--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_006663_060--Hb_073171_070 Hb_003040_050 Hb_003040_050 Hb_006663_060--Hb_003040_050 Hb_006210_010 Hb_006210_010 Hb_006663_060--Hb_006210_010 Hb_002874_110 Hb_002874_110 Hb_006663_060--Hb_002874_110 Hb_000568_050 Hb_000568_050 Hb_006663_060--Hb_000568_050 Hb_000773_040 Hb_000773_040 Hb_000270_190--Hb_000773_040 Hb_000270_190--Hb_073171_070 Hb_005214_140 Hb_005214_140 Hb_000270_190--Hb_005214_140 Hb_000270_190--Hb_003040_050 Hb_004324_360 Hb_004324_360 Hb_000270_190--Hb_004324_360 Hb_001329_250 Hb_001329_250 Hb_000270_190--Hb_001329_250 Hb_001876_040 Hb_001876_040 Hb_022250_010--Hb_001876_040 Hb_183086_030 Hb_183086_030 Hb_022250_010--Hb_183086_030 Hb_001157_230 Hb_001157_230 Hb_022250_010--Hb_001157_230 Hb_001029_040 Hb_001029_040 Hb_022250_010--Hb_001029_040 Hb_022250_010--Hb_000270_190 Hb_000996_020 Hb_000996_020 Hb_000336_020--Hb_000996_020 Hb_008397_010 Hb_008397_010 Hb_000336_020--Hb_008397_010 Hb_000529_060 Hb_000529_060 Hb_000336_020--Hb_000529_060 Hb_001856_180 Hb_001856_180 Hb_000336_020--Hb_001856_180 Hb_012055_110 Hb_012055_110 Hb_000336_020--Hb_012055_110 Hb_002849_170 Hb_002849_170 Hb_000336_020--Hb_002849_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4192 45.0751 46.543 54.7702 23.5286 25.8071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8158 19.8176 15.0419 36.5978 62.5822

CAGE analysis