Hb_183086_030

Information

Type -
Description -
Location Contig183086: 21494-25096
Sequence    

Annotation

kegg
ID rcu:RCOM_1748470
description hypothetical protein
nr
ID KHG13852.1
description GTPase-activating protein GYP7 [Gossypium arboreum]
swissprot
ID Q9UUH7
description GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1
trembl
ID A0A0B0NMJ2
description GTPase-activating protein GYP7 OS=Gossypium arboreum GN=F383_17109 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17865: 21709-22893 , PASA_asmbl_17866: 23551-25083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183086_030 0.0 - - GTPase-activating protein GYP7 [Gossypium arboreum]
2 Hb_033642_060 0.0311578932 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
3 Hb_022250_010 0.0657861231 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
4 Hb_001801_020 0.0798917417 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
5 Hb_000359_190 0.0801114112 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
6 Hb_000922_060 0.0877084965 - - kinesin light chain, putative [Ricinus communis]
7 Hb_001246_130 0.0890689456 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
8 Hb_001541_150 0.0894905665 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000510_150 0.0921828 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
10 Hb_021977_010 0.0941869501 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
11 Hb_008014_040 0.0948370661 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
12 Hb_002400_060 0.0965608092 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
13 Hb_015884_020 0.096783235 - - PREDICTED: protein PIR [Jatropha curcas]
14 Hb_000085_260 0.0969863852 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
15 Hb_007545_010 0.0974740826 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
16 Hb_000418_020 0.0976291891 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
17 Hb_001029_040 0.0983210922 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
18 Hb_005192_010 0.0997137917 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
19 Hb_000562_050 0.09998633 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
20 Hb_000300_030 0.1010369404 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]

Gene co-expression network

sample Hb_183086_030 Hb_183086_030 Hb_033642_060 Hb_033642_060 Hb_183086_030--Hb_033642_060 Hb_022250_010 Hb_022250_010 Hb_183086_030--Hb_022250_010 Hb_001801_020 Hb_001801_020 Hb_183086_030--Hb_001801_020 Hb_000359_190 Hb_000359_190 Hb_183086_030--Hb_000359_190 Hb_000922_060 Hb_000922_060 Hb_183086_030--Hb_000922_060 Hb_001246_130 Hb_001246_130 Hb_183086_030--Hb_001246_130 Hb_033642_060--Hb_001801_020 Hb_033642_060--Hb_022250_010 Hb_033642_060--Hb_000359_190 Hb_002400_060 Hb_002400_060 Hb_033642_060--Hb_002400_060 Hb_033642_060--Hb_001246_130 Hb_001876_040 Hb_001876_040 Hb_022250_010--Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_022250_010--Hb_001157_230 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_001029_040 Hb_001029_040 Hb_022250_010--Hb_001029_040 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190 Hb_001801_020--Hb_002400_060 Hb_001801_020--Hb_022250_010 Hb_126976_010 Hb_126976_010 Hb_001801_020--Hb_126976_010 Hb_002817_060 Hb_002817_060 Hb_001801_020--Hb_002817_060 Hb_000358_100 Hb_000358_100 Hb_000359_190--Hb_000358_100 Hb_044486_020 Hb_044486_020 Hb_000359_190--Hb_044486_020 Hb_000020_160 Hb_000020_160 Hb_000359_190--Hb_000020_160 Hb_021977_010 Hb_021977_010 Hb_000359_190--Hb_021977_010 Hb_000103_290 Hb_000103_290 Hb_000359_190--Hb_000103_290 Hb_003682_070 Hb_003682_070 Hb_000922_060--Hb_003682_070 Hb_000000_310 Hb_000000_310 Hb_000922_060--Hb_000000_310 Hb_005192_010 Hb_005192_010 Hb_000922_060--Hb_005192_010 Hb_000300_510 Hb_000300_510 Hb_000922_060--Hb_000300_510 Hb_000922_060--Hb_022250_010 Hb_002007_260 Hb_002007_260 Hb_001246_130--Hb_002007_260 Hb_030982_010 Hb_030982_010 Hb_001246_130--Hb_030982_010 Hb_006120_050 Hb_006120_050 Hb_001246_130--Hb_006120_050 Hb_000054_040 Hb_000054_040 Hb_001246_130--Hb_000054_040 Hb_002552_040 Hb_002552_040 Hb_001246_130--Hb_002552_040 Hb_002045_170 Hb_002045_170 Hb_001246_130--Hb_002045_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.66699 11.1639 11.7622 22.2513 6.83697 7.34152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2668 3.68544 4.8666 9.75018 19.0995

CAGE analysis