Hb_001157_230

Information

Type -
Description -
Location Contig1157: 172955-177462
Sequence    

Annotation

kegg
ID rcu:RCOM_0878040
description Protein AFR, putative
nr
ID XP_002527061.1
description Protein AFR, putative [Ricinus communis]
swissprot
ID Q93W93
description F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1
trembl
ID B9SM42
description Protein AFR, putative OS=Ricinus communis GN=RCOM_0878040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04727: 172956-177335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_230 0.0 - - Protein AFR, putative [Ricinus communis]
2 Hb_001876_040 0.0354596037 - - PREDICTED: mucin-5B [Jatropha curcas]
3 Hb_000212_120 0.0658091066 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
4 Hb_022250_010 0.0693332945 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
5 Hb_032202_220 0.0717342056 - - ring finger protein, putative [Ricinus communis]
6 Hb_024184_010 0.075690462 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
7 Hb_001029_040 0.0781337249 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
8 Hb_002774_190 0.0807473971 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
9 Hb_002928_090 0.0809146131 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
10 Hb_000049_020 0.0811862482 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_000359_210 0.0814610792 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002289_060 0.0816049645 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007545_010 0.0834180945 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
14 Hb_006970_020 0.08388296 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
15 Hb_002883_030 0.0847097767 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
16 Hb_001301_270 0.0848829849 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
17 Hb_000056_130 0.0850613807 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
18 Hb_002027_080 0.0851903852 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
19 Hb_008511_020 0.0863481891 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
20 Hb_011310_110 0.0871785446 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001157_230 Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_001157_230--Hb_001876_040 Hb_000212_120 Hb_000212_120 Hb_001157_230--Hb_000212_120 Hb_022250_010 Hb_022250_010 Hb_001157_230--Hb_022250_010 Hb_032202_220 Hb_032202_220 Hb_001157_230--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_001876_040--Hb_022250_010 Hb_001876_040--Hb_000212_120 Hb_001876_040--Hb_032202_220 Hb_001876_040--Hb_024184_010 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080 Hb_002774_190 Hb_002774_190 Hb_000212_120--Hb_002774_190 Hb_000212_120--Hb_032202_220 Hb_000061_180 Hb_000061_180 Hb_000212_120--Hb_000061_180 Hb_002883_030 Hb_002883_030 Hb_000212_120--Hb_002883_030 Hb_183086_030 Hb_183086_030 Hb_022250_010--Hb_183086_030 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_022250_010--Hb_001029_040 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190 Hb_001301_270 Hb_001301_270 Hb_032202_220--Hb_001301_270 Hb_000078_140 Hb_000078_140 Hb_032202_220--Hb_000078_140 Hb_032202_220--Hb_002774_190 Hb_032202_220--Hb_000061_180 Hb_003125_220 Hb_003125_220 Hb_024184_010--Hb_003125_220 Hb_024184_010--Hb_000212_120 Hb_024184_010--Hb_002883_030 Hb_007545_010 Hb_007545_010 Hb_024184_010--Hb_007545_010 Hb_001627_040 Hb_001627_040 Hb_001029_040--Hb_001627_040 Hb_001029_040--Hb_007545_010 Hb_003746_010 Hb_003746_010 Hb_001029_040--Hb_003746_010 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.7872 2.66161 4.38282 7.07069 2.74733 3.20895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62803 1.98167 2.58336 3.12537 7.36209

CAGE analysis