Hb_138585_080

Information

Type -
Description -
Location Contig138585: 59872-61527
Sequence    

Annotation

kegg
ID tcc:TCM_014724
description ARM repeat superfamily protein isoform 1
nr
ID XP_012090618.1
description PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID A0A067JIA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26389 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138585_080 0.0 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
2 Hb_009296_080 0.0555899329 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
3 Hb_001029_040 0.0788356119 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
4 Hb_000504_180 0.0854121579 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
5 Hb_001946_180 0.0870001231 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002874_110 0.0871359365 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
7 Hb_000465_280 0.0889203594 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
8 Hb_000803_320 0.0891480708 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
9 Hb_005650_010 0.093795387 - - ATP binding protein, putative [Ricinus communis]
10 Hb_007416_210 0.0938242519 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
11 Hb_126976_010 0.0945470091 - - -
12 Hb_001080_300 0.0951233357 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
13 Hb_002289_060 0.0956250389 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000409_030 0.0959104343 - - PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
15 Hb_003517_070 0.0966083343 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
16 Hb_002611_010 0.099289463 - - amino acid transporter, putative [Ricinus communis]
17 Hb_009288_020 0.0995015741 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
18 Hb_000237_050 0.0996794648 - - CP2 [Hevea brasiliensis]
19 Hb_000684_210 0.1005011761 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
20 Hb_006663_060 0.1022661204 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]

Gene co-expression network

sample Hb_138585_080 Hb_138585_080 Hb_009296_080 Hb_009296_080 Hb_138585_080--Hb_009296_080 Hb_001029_040 Hb_001029_040 Hb_138585_080--Hb_001029_040 Hb_000504_180 Hb_000504_180 Hb_138585_080--Hb_000504_180 Hb_001946_180 Hb_001946_180 Hb_138585_080--Hb_001946_180 Hb_002874_110 Hb_002874_110 Hb_138585_080--Hb_002874_110 Hb_000465_280 Hb_000465_280 Hb_138585_080--Hb_000465_280 Hb_004137_020 Hb_004137_020 Hb_009296_080--Hb_004137_020 Hb_009296_080--Hb_000504_180 Hb_009296_080--Hb_000465_280 Hb_012114_100 Hb_012114_100 Hb_009296_080--Hb_012114_100 Hb_000803_320 Hb_000803_320 Hb_009296_080--Hb_000803_320 Hb_001627_040 Hb_001627_040 Hb_001029_040--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_001029_040--Hb_007545_010 Hb_003746_010 Hb_003746_010 Hb_001029_040--Hb_003746_010 Hb_001157_230 Hb_001157_230 Hb_001029_040--Hb_001157_230 Hb_022250_010 Hb_022250_010 Hb_001029_040--Hb_022250_010 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_002289_060 Hb_002289_060 Hb_001946_180--Hb_002289_060 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_001842_010 Hb_001842_010 Hb_001946_180--Hb_001842_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_002749_060 Hb_002749_060 Hb_002874_110--Hb_002749_060 Hb_002874_110--Hb_000803_320 Hb_073171_070 Hb_073171_070 Hb_002874_110--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_002874_110--Hb_006663_060 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_009288_020 Hb_009288_020 Hb_002874_110--Hb_009288_020 Hb_012506_040 Hb_012506_040 Hb_000465_280--Hb_012506_040 Hb_006775_130 Hb_006775_130 Hb_000465_280--Hb_006775_130 Hb_007763_070 Hb_007763_070 Hb_000465_280--Hb_007763_070 Hb_000465_280--Hb_000504_180 Hb_002686_090 Hb_002686_090 Hb_000465_280--Hb_002686_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12927 3.04476 1.94256 5.78209 2.00054 1.66454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03595 1.84319 2.89613 3.07037 5.99099

CAGE analysis