Hb_007763_070

Information

Type -
Description -
Location Contig7763: 89472-91520
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10410g
description POPTRDRAFT_913720; pentatricopeptide repeat-containing family protein
nr
ID XP_012077266.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
swissprot
ID Q9C9I3
description Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1
trembl
ID A0A067LLI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17232 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57819: 90274-90431 , PASA_asmbl_57820: 90630-91049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007763_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
2 Hb_001712_060 0.0641940878 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
3 Hb_006775_130 0.0654955009 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
4 Hb_000193_330 0.0712007741 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
5 Hb_000465_280 0.0747265622 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
6 Hb_001789_110 0.0769590633 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000538_280 0.0772230751 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
8 Hb_004003_040 0.0784830661 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_001163_060 0.0795385459 - - neutral/alkaline invertase [Manihot esculenta]
10 Hb_000749_090 0.0803731209 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002046_160 0.0818964504 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000720_050 0.0831933733 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
13 Hb_001157_240 0.0845380911 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
14 Hb_000482_190 0.0846249058 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_004899_260 0.085284653 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
16 Hb_003040_050 0.0856437197 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
17 Hb_000441_090 0.0857447729 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
18 Hb_009288_020 0.0861471655 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
19 Hb_002027_080 0.0882544695 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
20 Hb_005736_020 0.0884312348 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]

Gene co-expression network

sample Hb_007763_070 Hb_007763_070 Hb_001712_060 Hb_001712_060 Hb_007763_070--Hb_001712_060 Hb_006775_130 Hb_006775_130 Hb_007763_070--Hb_006775_130 Hb_000193_330 Hb_000193_330 Hb_007763_070--Hb_000193_330 Hb_000465_280 Hb_000465_280 Hb_007763_070--Hb_000465_280 Hb_001789_110 Hb_001789_110 Hb_007763_070--Hb_001789_110 Hb_000538_280 Hb_000538_280 Hb_007763_070--Hb_000538_280 Hb_001712_060--Hb_006775_130 Hb_011249_070 Hb_011249_070 Hb_001712_060--Hb_011249_070 Hb_000482_190 Hb_000482_190 Hb_001712_060--Hb_000482_190 Hb_002046_160 Hb_002046_160 Hb_001712_060--Hb_002046_160 Hb_000300_270 Hb_000300_270 Hb_001712_060--Hb_000300_270 Hb_006775_130--Hb_000465_280 Hb_005736_020 Hb_005736_020 Hb_006775_130--Hb_005736_020 Hb_006775_130--Hb_000482_190 Hb_000504_180 Hb_000504_180 Hb_006775_130--Hb_000504_180 Hb_000193_330--Hb_000538_280 Hb_003040_050 Hb_003040_050 Hb_000193_330--Hb_003040_050 Hb_000181_340 Hb_000181_340 Hb_000193_330--Hb_000181_340 Hb_001163_060 Hb_001163_060 Hb_000193_330--Hb_001163_060 Hb_004003_040 Hb_004003_040 Hb_000193_330--Hb_004003_040 Hb_012506_040 Hb_012506_040 Hb_000465_280--Hb_012506_040 Hb_000465_280--Hb_000504_180 Hb_009296_080 Hb_009296_080 Hb_000465_280--Hb_009296_080 Hb_002686_090 Hb_002686_090 Hb_000465_280--Hb_002686_090 Hb_027073_020 Hb_027073_020 Hb_001789_110--Hb_027073_020 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_188281_040 Hb_188281_040 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_000538_280--Hb_003040_050 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_001005_130 Hb_001005_130 Hb_000538_280--Hb_001005_130 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22444 1.41656 1.07904 1.56453 0.918185 1.28583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.90082 1.19285 1.14814 1.11396 2.998

CAGE analysis