Hb_000181_340

Information

Type -
Description -
Location Contig181: 291664-300639
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41040g
description hypothetical protein
nr
ID XP_012084963.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
swissprot
ID F4I114
description Probable serine/threonine-protein kinase At1g09600 OS=Arabidopsis thaliana GN=At1g09600 PE=3 SV=1
trembl
ID A0A067K482
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20995 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17543: 292699-300535 , PASA_asmbl_17546: 300645-300762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_340 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
2 Hb_000193_330 0.0684102552 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
3 Hb_012632_010 0.0721507568 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
4 Hb_062226_070 0.0750811566 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
5 Hb_004374_110 0.0752976436 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
6 Hb_000103_340 0.0767818778 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
7 Hb_001999_290 0.0776728451 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
8 Hb_001279_040 0.0777902244 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
9 Hb_000445_090 0.0792093603 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
10 Hb_001563_010 0.0813548074 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
11 Hb_000094_070 0.0823532819 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
12 Hb_000039_150 0.0860650325 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
13 Hb_001635_120 0.0875761274 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
14 Hb_000174_270 0.0875828989 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
15 Hb_006275_020 0.0884549672 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
16 Hb_002539_070 0.08883605 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
17 Hb_008959_010 0.0910590956 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001498_010 0.0923043547 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
19 Hb_002830_010 0.0924009615 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
20 Hb_000948_150 0.0924244858 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000181_340 Hb_000181_340 Hb_000193_330 Hb_000193_330 Hb_000181_340--Hb_000193_330 Hb_012632_010 Hb_012632_010 Hb_000181_340--Hb_012632_010 Hb_062226_070 Hb_062226_070 Hb_000181_340--Hb_062226_070 Hb_004374_110 Hb_004374_110 Hb_000181_340--Hb_004374_110 Hb_000103_340 Hb_000103_340 Hb_000181_340--Hb_000103_340 Hb_001999_290 Hb_001999_290 Hb_000181_340--Hb_001999_290 Hb_000538_280 Hb_000538_280 Hb_000193_330--Hb_000538_280 Hb_003040_050 Hb_003040_050 Hb_000193_330--Hb_003040_050 Hb_001163_060 Hb_001163_060 Hb_000193_330--Hb_001163_060 Hb_004003_040 Hb_004003_040 Hb_000193_330--Hb_004003_040 Hb_007763_070 Hb_007763_070 Hb_000193_330--Hb_007763_070 Hb_003058_260 Hb_003058_260 Hb_012632_010--Hb_003058_260 Hb_002071_070 Hb_002071_070 Hb_012632_010--Hb_002071_070 Hb_002890_130 Hb_002890_130 Hb_012632_010--Hb_002890_130 Hb_000856_040 Hb_000856_040 Hb_012632_010--Hb_000856_040 Hb_002830_010 Hb_002830_010 Hb_012632_010--Hb_002830_010 Hb_012632_010--Hb_004374_110 Hb_003494_020 Hb_003494_020 Hb_062226_070--Hb_003494_020 Hb_000028_130 Hb_000028_130 Hb_062226_070--Hb_000028_130 Hb_000174_270 Hb_000174_270 Hb_062226_070--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_062226_070--Hb_004079_060 Hb_062226_070--Hb_001999_290 Hb_005582_040 Hb_005582_040 Hb_062226_070--Hb_005582_040 Hb_002235_200 Hb_002235_200 Hb_004374_110--Hb_002235_200 Hb_006839_010 Hb_006839_010 Hb_004374_110--Hb_006839_010 Hb_001157_240 Hb_001157_240 Hb_004374_110--Hb_001157_240 Hb_004374_110--Hb_002890_130 Hb_001377_100 Hb_001377_100 Hb_004374_110--Hb_001377_100 Hb_000214_050 Hb_000214_050 Hb_000103_340--Hb_000214_050 Hb_000635_090 Hb_000635_090 Hb_000103_340--Hb_000635_090 Hb_001018_090 Hb_001018_090 Hb_000103_340--Hb_001018_090 Hb_005214_140 Hb_005214_140 Hb_000103_340--Hb_005214_140 Hb_006275_020 Hb_006275_020 Hb_000103_340--Hb_006275_020 Hb_170416_010 Hb_170416_010 Hb_000103_340--Hb_170416_010 Hb_001999_290--Hb_001157_240 Hb_001999_290--Hb_000174_270 Hb_001999_290--Hb_004079_060 Hb_005736_020 Hb_005736_020 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65743 8.20886 6.97328 6.03984 5.42758 5.16849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.40836 3.99362 8.24518 4.45755 10.1533

CAGE analysis