Hb_000103_340

Information

Type -
Description -
Location Contig103: 287189-295472
Sequence    

Annotation

kegg
ID rcu:RCOM_0910950
description ATP binding protein, putative (EC:2.7.11.1)
nr
ID XP_012069719.1
description PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID A0A067KVN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02239 PE=4 SV=1
Gene Ontology
ID GO:0004672
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01230: 287556-287904 , PASA_asmbl_01231: 290576-291382 , PASA_asmbl_01233: 293402-295422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_340 0.0 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
2 Hb_000214_050 0.0680426892 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
3 Hb_000635_090 0.0680768955 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
4 Hb_001018_090 0.0683045598 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
5 Hb_005214_140 0.0684299974 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
6 Hb_006275_020 0.069038926 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
7 Hb_170416_010 0.0699431554 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
8 Hb_001481_060 0.0716327229 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
9 Hb_001716_020 0.0716813984 - - hydrolase, putative [Ricinus communis]
10 Hb_006913_020 0.071684029 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
11 Hb_002326_040 0.0725143454 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
12 Hb_001776_020 0.07309022 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
13 Hb_001377_190 0.0731083953 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
14 Hb_001761_120 0.0738166927 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
15 Hb_001863_360 0.0743749449 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
16 Hb_000363_310 0.075659433 - - DNA topoisomerase type I, putative [Ricinus communis]
17 Hb_033312_040 0.0758123158 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
18 Hb_000773_040 0.0759041669 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
19 Hb_000193_330 0.0767782573 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
20 Hb_000181_340 0.0767818778 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_340 Hb_000103_340 Hb_000214_050 Hb_000214_050 Hb_000103_340--Hb_000214_050 Hb_000635_090 Hb_000635_090 Hb_000103_340--Hb_000635_090 Hb_001018_090 Hb_001018_090 Hb_000103_340--Hb_001018_090 Hb_005214_140 Hb_005214_140 Hb_000103_340--Hb_005214_140 Hb_006275_020 Hb_006275_020 Hb_000103_340--Hb_006275_020 Hb_170416_010 Hb_170416_010 Hb_000103_340--Hb_170416_010 Hb_002326_040 Hb_002326_040 Hb_000214_050--Hb_002326_040 Hb_002811_270 Hb_002811_270 Hb_000214_050--Hb_002811_270 Hb_003186_020 Hb_003186_020 Hb_000214_050--Hb_003186_020 Hb_000373_080 Hb_000373_080 Hb_000214_050--Hb_000373_080 Hb_001518_080 Hb_001518_080 Hb_000214_050--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000214_050--Hb_001377_310 Hb_000635_090--Hb_001518_080 Hb_002027_080 Hb_002027_080 Hb_000635_090--Hb_002027_080 Hb_006913_020 Hb_006913_020 Hb_000635_090--Hb_006913_020 Hb_000270_190 Hb_000270_190 Hb_000635_090--Hb_000270_190 Hb_000773_040 Hb_000773_040 Hb_000635_090--Hb_000773_040 Hb_000363_310 Hb_000363_310 Hb_001018_090--Hb_000363_310 Hb_000567_070 Hb_000567_070 Hb_001018_090--Hb_000567_070 Hb_001018_090--Hb_000635_090 Hb_003747_120 Hb_003747_120 Hb_001018_090--Hb_003747_120 Hb_000111_170 Hb_000111_170 Hb_001018_090--Hb_000111_170 Hb_005214_140--Hb_000270_190 Hb_001257_030 Hb_001257_030 Hb_005214_140--Hb_001257_030 Hb_004044_050 Hb_004044_050 Hb_005214_140--Hb_004044_050 Hb_001817_170 Hb_001817_170 Hb_005214_140--Hb_001817_170 Hb_001329_250 Hb_001329_250 Hb_005214_140--Hb_001329_250 Hb_000120_130 Hb_000120_130 Hb_006275_020--Hb_000120_130 Hb_001500_060 Hb_001500_060 Hb_006275_020--Hb_001500_060 Hb_000015_170 Hb_000015_170 Hb_006275_020--Hb_000015_170 Hb_000061_030 Hb_000061_030 Hb_006275_020--Hb_000061_030 Hb_001761_120 Hb_001761_120 Hb_006275_020--Hb_001761_120 Hb_170416_010--Hb_001761_120 Hb_001226_150 Hb_001226_150 Hb_170416_010--Hb_001226_150 Hb_007765_100 Hb_007765_100 Hb_170416_010--Hb_007765_100 Hb_007007_120 Hb_007007_120 Hb_170416_010--Hb_007007_120 Hb_003531_080 Hb_003531_080 Hb_170416_010--Hb_003531_080 Hb_010931_070 Hb_010931_070 Hb_170416_010--Hb_010931_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7585 2.92415 3.26666 2.70459 1.6974 2.19748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42449 1.78097 2.16882 1.70841 3.21345

CAGE analysis