Hb_000567_070

Information

Type -
Description -
Location Contig567: 129080-133734
Sequence    

Annotation

kegg
ID rcu:RCOM_1014720
description autophagy protein, putative
nr
ID XP_002522565.1
description autophagy protein, putative [Ricinus communis]
swissprot
ID Q94CD5
description Ubiquitin-like modifier-activating enzyme atg7 OS=Arabidopsis thaliana GN=ATG7 PE=1 SV=1
trembl
ID B9S996
description Autophagy protein, putative OS=Ricinus communis GN=RCOM_1014720 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ubiquitin-like modifier-activating enzyme atg7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49109: 129018-133670 , PASA_asmbl_49111: 134660-135014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_070 0.0 - - autophagy protein, putative [Ricinus communis]
2 Hb_007821_020 0.0591766282 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
3 Hb_000390_230 0.0612218945 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
4 Hb_000254_100 0.0629593893 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
5 Hb_003186_020 0.0671265458 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
6 Hb_006483_110 0.0676030229 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
7 Hb_000115_280 0.0689344332 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
8 Hb_002055_020 0.0728871605 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
9 Hb_031284_010 0.0747715064 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
10 Hb_002326_040 0.0750737328 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
11 Hb_138435_010 0.0752286778 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
12 Hb_004994_010 0.0754312836 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
13 Hb_010931_070 0.0759550254 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
14 Hb_000111_170 0.0760395967 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
15 Hb_001153_210 0.0770381169 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
16 Hb_000363_310 0.0770499035 - - DNA topoisomerase type I, putative [Ricinus communis]
17 Hb_109980_010 0.0777027013 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
18 Hb_015807_050 0.0790295868 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
19 Hb_000339_040 0.0796672405 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
20 Hb_001226_150 0.0798770217 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000567_070 Hb_000567_070 Hb_007821_020 Hb_007821_020 Hb_000567_070--Hb_007821_020 Hb_000390_230 Hb_000390_230 Hb_000567_070--Hb_000390_230 Hb_000254_100 Hb_000254_100 Hb_000567_070--Hb_000254_100 Hb_003186_020 Hb_003186_020 Hb_000567_070--Hb_003186_020 Hb_006483_110 Hb_006483_110 Hb_000567_070--Hb_006483_110 Hb_000115_280 Hb_000115_280 Hb_000567_070--Hb_000115_280 Hb_007821_020--Hb_000254_100 Hb_003225_020 Hb_003225_020 Hb_007821_020--Hb_003225_020 Hb_007821_020--Hb_000115_280 Hb_031284_010 Hb_031284_010 Hb_007821_020--Hb_031284_010 Hb_007821_020--Hb_003186_020 Hb_000836_410 Hb_000836_410 Hb_000390_230--Hb_000836_410 Hb_004994_010 Hb_004994_010 Hb_000390_230--Hb_004994_010 Hb_000390_230--Hb_000115_280 Hb_000563_130 Hb_000563_130 Hb_000390_230--Hb_000563_130 Hb_138435_010 Hb_138435_010 Hb_000390_230--Hb_138435_010 Hb_000847_080 Hb_000847_080 Hb_000254_100--Hb_000847_080 Hb_004109_120 Hb_004109_120 Hb_000254_100--Hb_004109_120 Hb_030414_040 Hb_030414_040 Hb_000254_100--Hb_030414_040 Hb_000254_100--Hb_003186_020 Hb_001824_080 Hb_001824_080 Hb_000254_100--Hb_001824_080 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_003186_020--Hb_000115_280 Hb_007426_110 Hb_007426_110 Hb_006483_110--Hb_007426_110 Hb_028960_020 Hb_028960_020 Hb_006483_110--Hb_028960_020 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_041290_020 Hb_041290_020 Hb_006483_110--Hb_041290_020 Hb_002263_020 Hb_002263_020 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010 Hb_000115_280--Hb_031284_010 Hb_008059_010 Hb_008059_010 Hb_000115_280--Hb_008059_010 Hb_053079_020 Hb_053079_020 Hb_000115_280--Hb_053079_020 Hb_000115_280--Hb_000457_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.91043 5.93585 11.9017 6.6553 7.99092 7.13683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.80371 6.80372 5.75602 7.48169 8.71156

CAGE analysis