Hb_031284_010

Information

Type -
Description -
Location Contig31284: 47873-61944
Sequence    

Annotation

kegg
ID rcu:RCOM_0444500
description hypothetical protein
nr
ID XP_012071544.1
description PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
swissprot
ID Q05627
description Uncharacterized protein Cbei_0202 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=Cbei_0202 PE=4 SV=2
trembl
ID A0A067KRJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04060 PE=4 SV=1
Gene Ontology
ID GO:0009507
description fad nad -binding oxidoreductase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33111: 53466-53760 , PASA_asmbl_33112: 53766-54901 , PASA_asmbl_33113: 54916-56692 , PASA_asmbl_33114: 57743-59659 , PASA_asmbl_33115: 60191-60697 , PASA_asmbl_33116: 60819-61889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031284_010 0.0 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
2 Hb_008059_010 0.0410615737 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
3 Hb_000115_280 0.0490709682 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
4 Hb_003186_020 0.0548816107 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
5 Hb_138435_010 0.0620564167 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
6 Hb_000120_210 0.0634076798 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
7 Hb_000457_230 0.0638528214 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
8 Hb_004096_240 0.0646719368 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
9 Hb_030414_040 0.0671066355 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
10 Hb_000175_410 0.067636379 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
11 Hb_005288_070 0.0698902022 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
12 Hb_001153_210 0.0699743076 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
13 Hb_000254_100 0.0703742382 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
14 Hb_001158_160 0.0708427659 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
15 Hb_007283_010 0.0708428477 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
16 Hb_003225_020 0.0717718461 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
17 Hb_007821_020 0.0717917643 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
18 Hb_000390_230 0.0723882032 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
19 Hb_007765_100 0.0740849879 - - PREDICTED: helicase SKI2W [Jatropha curcas]
20 Hb_000567_070 0.0747715064 - - autophagy protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_031284_010 Hb_031284_010 Hb_008059_010 Hb_008059_010 Hb_031284_010--Hb_008059_010 Hb_000115_280 Hb_000115_280 Hb_031284_010--Hb_000115_280 Hb_003186_020 Hb_003186_020 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_000457_230 Hb_000457_230 Hb_031284_010--Hb_000457_230 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_008059_010--Hb_000115_280 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_000115_280--Hb_003186_020 Hb_000390_230 Hb_000390_230 Hb_000115_280--Hb_000390_230 Hb_053079_020 Hb_053079_020 Hb_000115_280--Hb_053079_020 Hb_000115_280--Hb_000457_230 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_001153_210 Hb_001153_210 Hb_138435_010--Hb_001153_210 Hb_138435_010--Hb_003186_020 Hb_000847_080 Hb_000847_080 Hb_138435_010--Hb_000847_080 Hb_032202_080 Hb_032202_080 Hb_138435_010--Hb_032202_080 Hb_001226_150 Hb_001226_150 Hb_138435_010--Hb_001226_150 Hb_004096_240 Hb_004096_240 Hb_000120_210--Hb_004096_240 Hb_030414_040 Hb_030414_040 Hb_000120_210--Hb_030414_040 Hb_000120_210--Hb_001153_210 Hb_000111_170 Hb_000111_170 Hb_000120_210--Hb_000111_170 Hb_021943_080 Hb_021943_080 Hb_000120_210--Hb_021943_080 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000457_230--Hb_000205_260 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_000457_230--Hb_032202_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86258 3.92994 6.65025 3.28785 4.59172 4.69901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78959 3.12615 2.3522 3.68341 6.44849

CAGE analysis