Hb_032202_080

Information

Type -
Description -
Location Contig32202: 64861-68513
Sequence    

Annotation

kegg
ID rcu:RCOM_1613360
description hypothetical protein
nr
ID XP_012080901.1
description PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
swissprot
ID Q8S8S1
description Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana GN=PEX16 PE=1 SV=1
trembl
ID A0A067KFB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15253 PE=4 SV=1
Gene Ontology
ID GO:0006631
description peroxisome biogenesis protein 16-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34067: 64884-68215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_080 0.0 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
2 Hb_000457_230 0.0554879255 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
3 Hb_002615_120 0.0578358278 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
4 Hb_001776_060 0.0588721495 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
5 Hb_138435_010 0.062731554 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
6 Hb_008568_020 0.0668294682 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
7 Hb_001405_190 0.0699383815 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
8 Hb_003186_020 0.0709216791 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
9 Hb_000922_020 0.071266909 - - protein binding protein, putative [Ricinus communis]
10 Hb_002067_030 0.0714669127 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
11 Hb_001153_210 0.0731944967 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
12 Hb_000525_100 0.073298201 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
13 Hb_001005_030 0.0734439455 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
14 Hb_000640_160 0.0737021964 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
15 Hb_001635_040 0.0745014785 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
16 Hb_031284_010 0.0753096128 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
17 Hb_017151_010 0.0756657483 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
18 Hb_000260_680 0.0763070542 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
19 Hb_008059_010 0.0769158169 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
20 Hb_001377_110 0.0770424518 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]

Gene co-expression network

sample Hb_032202_080 Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_032202_080--Hb_000457_230 Hb_002615_120 Hb_002615_120 Hb_032202_080--Hb_002615_120 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_008568_020 Hb_008568_020 Hb_032202_080--Hb_008568_020 Hb_001405_190 Hb_001405_190 Hb_032202_080--Hb_001405_190 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_002615_120--Hb_001405_190 Hb_002615_120--Hb_008568_020 Hb_002615_120--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_002615_120--Hb_000836_410 Hb_000098_140 Hb_000098_140 Hb_002615_120--Hb_000098_140 Hb_012384_030 Hb_012384_030 Hb_001776_060--Hb_012384_030 Hb_000260_680 Hb_000260_680 Hb_001776_060--Hb_000260_680 Hb_000144_070 Hb_000144_070 Hb_001776_060--Hb_000144_070 Hb_002217_110 Hb_002217_110 Hb_001776_060--Hb_002217_110 Hb_007290_030 Hb_007290_030 Hb_001776_060--Hb_007290_030 Hb_001153_210 Hb_001153_210 Hb_138435_010--Hb_001153_210 Hb_138435_010--Hb_003186_020 Hb_031284_010 Hb_031284_010 Hb_138435_010--Hb_031284_010 Hb_000847_080 Hb_000847_080 Hb_138435_010--Hb_000847_080 Hb_001226_150 Hb_001226_150 Hb_138435_010--Hb_001226_150 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_143766_110 Hb_143766_110 Hb_001405_190--Hb_143766_110 Hb_007929_080 Hb_007929_080 Hb_001405_190--Hb_007929_080 Hb_004631_190 Hb_004631_190 Hb_001405_190--Hb_004631_190 Hb_000922_020 Hb_000922_020 Hb_001405_190--Hb_000922_020 Hb_010362_030 Hb_010362_030 Hb_001405_190--Hb_010362_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9114 9.49725 15.2921 7.7368 10.1286 9.61862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.15224 6.30011 4.55581 5.96181 9.74076

CAGE analysis