Hb_154580_010

Information

Type -
Description -
Location Contig154580: 877-2512
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002109mg
description hypothetical protein
nr
ID XP_007220616.1
description hypothetical protein PRUPE_ppa002109mg [Prunus persica]
swissprot
ID F4J3T8
description Phosphatidylinositol-3-phosphatase myotubularin-1 OS=Arabidopsis thaliana GN=MTM1 PE=1 SV=1
trembl
ID M5XS15
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002109mg PE=4 SV=1
Gene Ontology
ID GO:0004725
description phosphatidylinositol-3-phosphatase myotubularin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13384: 900-2437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154580_010 0.0 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
2 Hb_002067_030 0.0515479735 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
3 Hb_008568_020 0.0526638789 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
4 Hb_003096_060 0.0563162503 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
5 Hb_000645_170 0.0626560405 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005289_040 0.0645288262 - - poly(A) polymerase, putative [Ricinus communis]
7 Hb_026980_020 0.065073407 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
8 Hb_000836_410 0.0663071774 - - sec10, putative [Ricinus communis]
9 Hb_004994_010 0.0671992918 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
10 Hb_000358_230 0.0680318036 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
11 Hb_003638_090 0.0705386966 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
12 Hb_001430_080 0.0707695385 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
13 Hb_003927_040 0.0715448951 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
14 Hb_106552_020 0.0727248075 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
15 Hb_002325_040 0.0728999665 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
16 Hb_002615_120 0.0729494041 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
17 Hb_000260_680 0.0734059975 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
18 Hb_128548_010 0.073583112 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002876_130 0.0745225709 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
20 Hb_000329_590 0.0746759223 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_154580_010 Hb_154580_010 Hb_002067_030 Hb_002067_030 Hb_154580_010--Hb_002067_030 Hb_008568_020 Hb_008568_020 Hb_154580_010--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_154580_010--Hb_003096_060 Hb_000645_170 Hb_000645_170 Hb_154580_010--Hb_000645_170 Hb_005289_040 Hb_005289_040 Hb_154580_010--Hb_005289_040 Hb_026980_020 Hb_026980_020 Hb_154580_010--Hb_026980_020 Hb_000098_140 Hb_000098_140 Hb_002067_030--Hb_000098_140 Hb_001636_050 Hb_001636_050 Hb_002067_030--Hb_001636_050 Hb_000260_680 Hb_000260_680 Hb_002067_030--Hb_000260_680 Hb_013394_030 Hb_013394_030 Hb_002067_030--Hb_013394_030 Hb_000329_590 Hb_000329_590 Hb_002067_030--Hb_000329_590 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_001135_120 Hb_001135_120 Hb_003096_060--Hb_001135_120 Hb_003927_040 Hb_003927_040 Hb_000645_170--Hb_003927_040 Hb_001430_080 Hb_001430_080 Hb_000645_170--Hb_001430_080 Hb_004236_050 Hb_004236_050 Hb_000645_170--Hb_004236_050 Hb_000645_170--Hb_001636_050 Hb_003638_090 Hb_003638_090 Hb_005289_040--Hb_003638_090 Hb_005588_090 Hb_005588_090 Hb_005289_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_005289_040--Hb_000398_080 Hb_002805_190 Hb_002805_190 Hb_005289_040--Hb_002805_190 Hb_000134_270 Hb_000134_270 Hb_005289_040--Hb_000134_270 Hb_000340_030 Hb_000340_030 Hb_026980_020--Hb_000340_030 Hb_000139_320 Hb_000139_320 Hb_026980_020--Hb_000139_320 Hb_003711_010 Hb_003711_010 Hb_026980_020--Hb_003711_010 Hb_003849_140 Hb_003849_140 Hb_026980_020--Hb_003849_140 Hb_005542_050 Hb_005542_050 Hb_026980_020--Hb_005542_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.187 16.8938 19.2732 10.4282 14.3547 13.5359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.67838 9.65528 5.80823 12.6468 8.74706

CAGE analysis