Hb_002067_030

Information

Type -
Description -
Location Contig2067: 10009-24624
Sequence    

Annotation

kegg
ID rcu:RCOM_0211520
description poly(ADP-ribose) glycohydrolase, putative (EC:3.2.1.143)
nr
ID XP_012081911.1
description PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SKB3
description Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2
trembl
ID A0A067K079
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19255 PE=4 SV=1
Gene Ontology
ID GO:0004649
description poly(adp-ribose) glycohydrolase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21289: 10154-12551 , PASA_asmbl_21290: 13558-24369 , PASA_asmbl_21291: 24457-24608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_030 0.0 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
2 Hb_000098_140 0.049047143 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
3 Hb_154580_010 0.0515479735 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
4 Hb_001636_050 0.0599148391 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
5 Hb_000260_680 0.0685253027 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
6 Hb_013394_030 0.06929936 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
7 Hb_000329_590 0.0696320263 - - catalytic, putative [Ricinus communis]
8 Hb_128548_010 0.070142529 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002615_120 0.0704635923 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
10 Hb_032202_080 0.0714669127 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
11 Hb_008568_020 0.0719373104 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
12 Hb_005289_040 0.0720373229 - - poly(A) polymerase, putative [Ricinus communis]
13 Hb_003638_090 0.0730907826 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
14 Hb_000390_230 0.0731373168 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
15 Hb_000645_170 0.0764653219 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000836_410 0.0774480425 - - sec10, putative [Ricinus communis]
17 Hb_004994_010 0.0780245638 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
18 Hb_001153_210 0.0785183992 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
19 Hb_002701_150 0.0786047662 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_003579_050 0.0799011868 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_002067_030 Hb_002067_030 Hb_000098_140 Hb_000098_140 Hb_002067_030--Hb_000098_140 Hb_154580_010 Hb_154580_010 Hb_002067_030--Hb_154580_010 Hb_001636_050 Hb_001636_050 Hb_002067_030--Hb_001636_050 Hb_000260_680 Hb_000260_680 Hb_002067_030--Hb_000260_680 Hb_013394_030 Hb_013394_030 Hb_002067_030--Hb_013394_030 Hb_000329_590 Hb_000329_590 Hb_002067_030--Hb_000329_590 Hb_002615_120 Hb_002615_120 Hb_000098_140--Hb_002615_120 Hb_000098_140--Hb_001636_050 Hb_032202_080 Hb_032202_080 Hb_000098_140--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_000098_140--Hb_000457_230 Hb_000023_320 Hb_000023_320 Hb_000098_140--Hb_000023_320 Hb_008568_020 Hb_008568_020 Hb_154580_010--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_154580_010--Hb_003096_060 Hb_000645_170 Hb_000645_170 Hb_154580_010--Hb_000645_170 Hb_005289_040 Hb_005289_040 Hb_154580_010--Hb_005289_040 Hb_026980_020 Hb_026980_020 Hb_154580_010--Hb_026980_020 Hb_007044_110 Hb_007044_110 Hb_001636_050--Hb_007044_110 Hb_004976_010 Hb_004976_010 Hb_001636_050--Hb_004976_010 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_055235_020 Hb_055235_020 Hb_001636_050--Hb_055235_020 Hb_001776_060 Hb_001776_060 Hb_000260_680--Hb_001776_060 Hb_000331_110 Hb_000331_110 Hb_000260_680--Hb_000331_110 Hb_002217_110 Hb_002217_110 Hb_000260_680--Hb_002217_110 Hb_079526_030 Hb_079526_030 Hb_000260_680--Hb_079526_030 Hb_001153_210 Hb_001153_210 Hb_000260_680--Hb_001153_210 Hb_005779_010 Hb_005779_010 Hb_000260_680--Hb_005779_010 Hb_128548_010 Hb_128548_010 Hb_013394_030--Hb_128548_010 Hb_000144_070 Hb_000144_070 Hb_013394_030--Hb_000144_070 Hb_004994_010 Hb_004994_010 Hb_013394_030--Hb_004994_010 Hb_010407_050 Hb_010407_050 Hb_013394_030--Hb_010407_050 Hb_013394_030--Hb_008568_020 Hb_005389_100 Hb_005389_100 Hb_000329_590--Hb_005389_100 Hb_000329_590--Hb_154580_010 Hb_000329_590--Hb_000260_680 Hb_005355_030 Hb_005355_030 Hb_000329_590--Hb_005355_030 Hb_009659_050 Hb_009659_050 Hb_000329_590--Hb_009659_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.97007 8.02447 11.86 4.46329 8.1696 6.3353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.6951 4.94449 3.04863 6.22907 5.35537

CAGE analysis