Hb_000098_140

Information

Type -
Description -
Location Contig98: 146254-152978
Sequence    

Annotation

kegg
ID rcu:RCOM_0321500
description phosphomethylpyrimidine kinase, putative (EC:2.7.4.7 2.5.1.3)
nr
ID KDP38832.1
description hypothetical protein JCGZ_04989 [Jatropha curcas]
swissprot
ID Q5M731
description Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic OS=Arabidopsis thaliana GN=TH1 PE=1 SV=1
trembl
ID A0A067KRT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04989 PE=3 SV=1
Gene Ontology
ID GO:0004789
description thiamine biosynthetic bifunctional enzyme chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64342: 146254-148080 , PASA_asmbl_64345: 152370-152639 , PASA_asmbl_64346: 152395-152955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_140 0.0 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
2 Hb_002067_030 0.049047143 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
3 Hb_002615_120 0.0677101874 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
4 Hb_001636_050 0.0704607509 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
5 Hb_032202_080 0.0786994489 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
6 Hb_000457_230 0.0827827748 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
7 Hb_000023_320 0.0844297261 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001405_190 0.0853748755 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
9 Hb_154580_010 0.0860094964 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
10 Hb_005389_100 0.0877627616 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
11 Hb_128548_010 0.0882354721 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002701_150 0.0889860115 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
13 Hb_000102_050 0.0897059729 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
14 Hb_001005_020 0.0904310224 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
15 Hb_034243_040 0.0915704863 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
16 Hb_013394_030 0.0917618796 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
17 Hb_007044_110 0.0917705051 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000207_200 0.092840397 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
19 Hb_138435_010 0.0931974792 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
20 Hb_000836_410 0.0932259278 - - sec10, putative [Ricinus communis]

Gene co-expression network

sample Hb_000098_140 Hb_000098_140 Hb_002067_030 Hb_002067_030 Hb_000098_140--Hb_002067_030 Hb_002615_120 Hb_002615_120 Hb_000098_140--Hb_002615_120 Hb_001636_050 Hb_001636_050 Hb_000098_140--Hb_001636_050 Hb_032202_080 Hb_032202_080 Hb_000098_140--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_000098_140--Hb_000457_230 Hb_000023_320 Hb_000023_320 Hb_000098_140--Hb_000023_320 Hb_154580_010 Hb_154580_010 Hb_002067_030--Hb_154580_010 Hb_002067_030--Hb_001636_050 Hb_000260_680 Hb_000260_680 Hb_002067_030--Hb_000260_680 Hb_013394_030 Hb_013394_030 Hb_002067_030--Hb_013394_030 Hb_000329_590 Hb_000329_590 Hb_002067_030--Hb_000329_590 Hb_001405_190 Hb_001405_190 Hb_002615_120--Hb_001405_190 Hb_008568_020 Hb_008568_020 Hb_002615_120--Hb_008568_020 Hb_002615_120--Hb_032202_080 Hb_002615_120--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_002615_120--Hb_000836_410 Hb_007044_110 Hb_007044_110 Hb_001636_050--Hb_007044_110 Hb_004976_010 Hb_004976_010 Hb_001636_050--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_055235_020 Hb_055235_020 Hb_001636_050--Hb_055235_020 Hb_032202_080--Hb_000457_230 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_032202_080--Hb_008568_020 Hb_032202_080--Hb_001405_190 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_000926_010 Hb_000926_010 Hb_000023_320--Hb_000926_010 Hb_000023_320--Hb_001636_050 Hb_000264_070 Hb_000264_070 Hb_000023_320--Hb_000264_070 Hb_001047_200 Hb_001047_200 Hb_000023_320--Hb_001047_200 Hb_000679_340 Hb_000679_340 Hb_000023_320--Hb_000679_340 Hb_143766_110 Hb_143766_110 Hb_000023_320--Hb_143766_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.64831 9.24626 15.4713 4.5894 9.15027 7.17898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05164 4.70118 3.06589 6.14645 6.68489

CAGE analysis