Hb_011972_020

Information

Type -
Description -
Location Contig11972: 33137-43122
Sequence    

Annotation

kegg
ID rcu:RCOM_0145120
description protein binding protein, putative
nr
ID XP_002533927.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID P40318
description ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1 SV=1
trembl
ID B9T6Q8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0145120 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05929: 33177-43057 , PASA_asmbl_05930: 34857-35069 , PASA_asmbl_05932: 39523-39819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011972_020 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_055235_020 0.0500429913 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
3 Hb_000457_230 0.0520199651 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
4 Hb_000529_060 0.0573575289 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
5 Hb_002014_040 0.0600105602 - - site-1 protease, putative [Ricinus communis]
6 Hb_000238_040 0.0607293165 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
7 Hb_098209_010 0.0614072484 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
8 Hb_007044_110 0.066404632 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_003186_020 0.0667193641 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
10 Hb_000879_040 0.0682022563 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
11 Hb_005333_140 0.0692527665 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
12 Hb_000130_420 0.0696312629 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
13 Hb_000336_020 0.0709755066 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
14 Hb_004976_010 0.071290483 - - hypothetical protein RCOM_1429110 [Ricinus communis]
15 Hb_000205_260 0.0719146333 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
16 Hb_002814_110 0.0721539994 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
17 Hb_000523_080 0.0731745809 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
18 Hb_000362_170 0.0732003197 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
19 Hb_001579_330 0.0732776015 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
20 Hb_000445_060 0.0742379853 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_011972_020 Hb_011972_020 Hb_055235_020 Hb_055235_020 Hb_011972_020--Hb_055235_020 Hb_000457_230 Hb_000457_230 Hb_011972_020--Hb_000457_230 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_002014_040 Hb_002014_040 Hb_011972_020--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_011972_020--Hb_000238_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_000318_120 Hb_000318_120 Hb_055235_020--Hb_000318_120 Hb_007044_110 Hb_007044_110 Hb_055235_020--Hb_007044_110 Hb_004976_010 Hb_004976_010 Hb_055235_020--Hb_004976_010 Hb_001636_050 Hb_001636_050 Hb_055235_020--Hb_001636_050 Hb_055235_020--Hb_000457_230 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_000362_170 Hb_000362_170 Hb_002014_040--Hb_000362_170 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_002014_040--Hb_008226_090 Hb_005895_010 Hb_005895_010 Hb_002014_040--Hb_005895_010 Hb_001579_330 Hb_001579_330 Hb_000238_040--Hb_001579_330 Hb_000116_030 Hb_000116_030 Hb_000238_040--Hb_000116_030 Hb_002811_270 Hb_002811_270 Hb_000238_040--Hb_002811_270 Hb_000130_420 Hb_000130_420 Hb_000238_040--Hb_000130_420 Hb_000238_040--Hb_000457_230 Hb_098209_010--Hb_000457_230 Hb_001377_110 Hb_001377_110 Hb_098209_010--Hb_001377_110 Hb_001723_140 Hb_001723_140 Hb_098209_010--Hb_001723_140 Hb_098209_010--Hb_005895_010 Hb_098209_010--Hb_002014_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1011 21.8022 25.0482 17.4537 18.8074 13.4885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.70621 8.00327 8.41601 15.1028 20.0742

CAGE analysis