Hb_000238_040

Information

Type -
Description -
Location Contig238: 112646-114766
Sequence    

Annotation

kegg
ID cit:102611758
description uncharacterized LOC102611758
nr
ID XP_006494714.1
description PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A5C0G0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016971 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24983: 92397-114718 , PASA_asmbl_24984: 104947-113377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000238_040 0.0 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
2 Hb_001579_330 0.0364345777 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
3 Hb_011972_020 0.0607293165 - - protein binding protein, putative [Ricinus communis]
4 Hb_000116_030 0.0642927966 - - PREDICTED: protein GRIP [Jatropha curcas]
5 Hb_002811_270 0.0721249706 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
6 Hb_000130_420 0.0742023325 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
7 Hb_000457_230 0.0744871184 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
8 Hb_055235_020 0.0746849488 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
9 Hb_002889_010 0.0763155819 - - ubx domain-containing, putative [Ricinus communis]
10 Hb_000214_050 0.0777183417 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
11 Hb_000847_080 0.0777688929 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
12 Hb_016777_040 0.0787907393 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
13 Hb_032202_080 0.0789444783 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
14 Hb_000665_120 0.0796063116 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
15 Hb_000086_500 0.0796289391 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
16 Hb_007290_030 0.0805752495 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
17 Hb_128548_010 0.081308787 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008568_020 0.0820709308 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
19 Hb_000645_170 0.0827431831 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000227_270 0.0827932682 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000238_040 Hb_000238_040 Hb_001579_330 Hb_001579_330 Hb_000238_040--Hb_001579_330 Hb_011972_020 Hb_011972_020 Hb_000238_040--Hb_011972_020 Hb_000116_030 Hb_000116_030 Hb_000238_040--Hb_000116_030 Hb_002811_270 Hb_002811_270 Hb_000238_040--Hb_002811_270 Hb_000130_420 Hb_000130_420 Hb_000238_040--Hb_000130_420 Hb_000457_230 Hb_000457_230 Hb_000238_040--Hb_000457_230 Hb_001579_330--Hb_002811_270 Hb_001579_330--Hb_011972_020 Hb_001579_330--Hb_000130_420 Hb_001257_030 Hb_001257_030 Hb_001579_330--Hb_001257_030 Hb_001579_330--Hb_000116_030 Hb_055235_020 Hb_055235_020 Hb_011972_020--Hb_055235_020 Hb_011972_020--Hb_000457_230 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_002014_040 Hb_002014_040 Hb_011972_020--Hb_002014_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_001241_010 Hb_001241_010 Hb_000116_030--Hb_001241_010 Hb_001584_350 Hb_001584_350 Hb_000116_030--Hb_001584_350 Hb_000330_060 Hb_000330_060 Hb_000116_030--Hb_000330_060 Hb_002889_010 Hb_002889_010 Hb_000116_030--Hb_002889_010 Hb_000214_050 Hb_000214_050 Hb_002811_270--Hb_000214_050 Hb_002326_040 Hb_002326_040 Hb_002811_270--Hb_002326_040 Hb_001518_080 Hb_001518_080 Hb_002811_270--Hb_001518_080 Hb_012506_030 Hb_012506_030 Hb_002811_270--Hb_012506_030 Hb_000373_080 Hb_000373_080 Hb_002811_270--Hb_000373_080 Hb_003186_020 Hb_003186_020 Hb_002811_270--Hb_003186_020 Hb_004912_030 Hb_004912_030 Hb_000130_420--Hb_004912_030 Hb_000362_170 Hb_000362_170 Hb_000130_420--Hb_000362_170 Hb_000635_040 Hb_000635_040 Hb_000130_420--Hb_000635_040 Hb_000130_420--Hb_011972_020 Hb_000130_420--Hb_002014_040 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_000457_230--Hb_003186_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.64509 5.84151 7.51875 5.34617 4.85005 3.61988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26544 2.78478 2.67795 4.31782 5.26457

CAGE analysis