Hb_002326_040

Information

Type transcription factor
Description TF Family: B3
Location Contig2326: 50749-60916
Sequence    

Annotation

kegg
ID rcu:RCOM_1592590
description hypothetical protein
nr
ID XP_012071730.1
description PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
swissprot
ID Q2R9D2
description B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica GN=Os11g0197600 PE=2 SV=1
trembl
ID A0A067KQC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04341 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing protein os01g0723500-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24457: 55163-55823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_040 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
2 Hb_000214_050 0.0500983546 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
3 Hb_012506_030 0.0507576627 - - AP-2 complex subunit alpha, putative [Ricinus communis]
4 Hb_002811_270 0.053949241 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
5 Hb_001518_080 0.0647980236 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
6 Hb_007248_030 0.0656523121 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
7 Hb_023313_040 0.0657729775 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
8 Hb_004109_320 0.0670333694 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
9 Hb_002849_130 0.0674936369 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
10 Hb_000317_040 0.0686739161 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
11 Hb_015807_050 0.068875564 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
12 Hb_170416_010 0.0691986374 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
13 Hb_000006_010 0.0693415727 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000856_040 0.0693621999 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
15 Hb_000085_170 0.0700721886 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
16 Hb_001002_060 0.0704266039 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
17 Hb_004586_060 0.0704700262 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
18 Hb_000702_090 0.0712621066 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
19 Hb_000103_340 0.0725143454 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
20 Hb_000477_050 0.073075586 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_002326_040 Hb_002326_040 Hb_000214_050 Hb_000214_050 Hb_002326_040--Hb_000214_050 Hb_012506_030 Hb_012506_030 Hb_002326_040--Hb_012506_030 Hb_002811_270 Hb_002811_270 Hb_002326_040--Hb_002811_270 Hb_001518_080 Hb_001518_080 Hb_002326_040--Hb_001518_080 Hb_007248_030 Hb_007248_030 Hb_002326_040--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_002326_040--Hb_023313_040 Hb_000214_050--Hb_002811_270 Hb_003186_020 Hb_003186_020 Hb_000214_050--Hb_003186_020 Hb_000373_080 Hb_000373_080 Hb_000214_050--Hb_000373_080 Hb_000214_050--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000214_050--Hb_001377_310 Hb_000441_220 Hb_000441_220 Hb_012506_030--Hb_000441_220 Hb_005137_040 Hb_005137_040 Hb_012506_030--Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_012506_030--Hb_005918_010 Hb_000085_170 Hb_000085_170 Hb_012506_030--Hb_000085_170 Hb_012506_030--Hb_002811_270 Hb_002811_270--Hb_001518_080 Hb_002811_270--Hb_000373_080 Hb_002811_270--Hb_003186_020 Hb_000635_090 Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002027_080 Hb_002027_080 Hb_001518_080--Hb_002027_080 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_004586_060 Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_001405_210 Hb_001405_210 Hb_007248_030--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_001856_180 Hb_001856_180 Hb_007248_030--Hb_001856_180 Hb_000019_190 Hb_000019_190 Hb_023313_040--Hb_000019_190 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_000006_010 Hb_000006_010 Hb_023313_040--Hb_000006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6458 4.27245 6.51525 5.91852 4.4941 3.84947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65429 3.16543 3.91675 3.89338 4.82884

CAGE analysis