Hb_000019_190

Information

Type -
Description -
Location Contig19: 182387-186993
Sequence    

Annotation

kegg
ID pop:POPTR_0002s23900g
description POPTRDRAFT_409038; hypothetical protein
nr
ID XP_002301759.2
description hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
swissprot
ID O22781
description Histone-lysine N-methyltransferase family member SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1
trembl
ID B9GNG0
description Histone-lysine N-methyltransferase OS=Populus trichocarpa GN=POPTR_0002s23900g PE=4 SV=2
Gene Ontology
ID GO:0005634
description histone-lysine n- h3 lysine-9 specific suvh4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_190 0.0 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
2 Hb_023313_040 0.0516727286 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
3 Hb_002014_010 0.0529711941 - - Uncharacterized protein isoform 1 [Theobroma cacao]
4 Hb_001227_120 0.0646355935 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
5 Hb_007007_040 0.065345409 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
6 Hb_007248_030 0.0666219683 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
7 Hb_163175_010 0.0678499857 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
8 Hb_001221_440 0.0687635437 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
9 Hb_171900_090 0.0690357182 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000702_090 0.0690755731 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
11 Hb_007413_040 0.0722659597 - - myo inositol monophosphatase, putative [Ricinus communis]
12 Hb_000803_270 0.0723741124 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
13 Hb_004586_060 0.0732779676 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
14 Hb_001405_210 0.0748415935 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
15 Hb_000365_230 0.0772674024 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
16 Hb_004109_320 0.077562569 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
17 Hb_183433_010 0.0792692985 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
18 Hb_004096_160 0.080950349 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
19 Hb_000331_090 0.0816078631 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
20 Hb_002326_040 0.0816516451 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]

Gene co-expression network

sample Hb_000019_190 Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_000019_190--Hb_023313_040 Hb_002014_010 Hb_002014_010 Hb_000019_190--Hb_002014_010 Hb_001227_120 Hb_001227_120 Hb_000019_190--Hb_001227_120 Hb_007007_040 Hb_007007_040 Hb_000019_190--Hb_007007_040 Hb_007248_030 Hb_007248_030 Hb_000019_190--Hb_007248_030 Hb_163175_010 Hb_163175_010 Hb_000019_190--Hb_163175_010 Hb_000702_090 Hb_000702_090 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_000006_010 Hb_000006_010 Hb_023313_040--Hb_000006_010 Hb_002014_010--Hb_007248_030 Hb_004109_320 Hb_004109_320 Hb_002014_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_002014_010--Hb_171900_090 Hb_002014_010--Hb_000702_090 Hb_000365_230 Hb_000365_230 Hb_002014_010--Hb_000365_230 Hb_159809_070 Hb_159809_070 Hb_001227_120--Hb_159809_070 Hb_001279_190 Hb_001279_190 Hb_001227_120--Hb_001279_190 Hb_001227_120--Hb_023313_040 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010 Hb_003119_090 Hb_003119_090 Hb_007007_040--Hb_003119_090 Hb_000751_030 Hb_000751_030 Hb_007007_040--Hb_000751_030 Hb_007007_040--Hb_023313_040 Hb_003760_030 Hb_003760_030 Hb_007007_040--Hb_003760_030 Hb_007007_040--Hb_000006_010 Hb_004586_060 Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_001405_210 Hb_001405_210 Hb_007248_030--Hb_001405_210 Hb_007248_030--Hb_000702_090 Hb_001856_180 Hb_001856_180 Hb_007248_030--Hb_001856_180 Hb_164390_010 Hb_164390_010 Hb_163175_010--Hb_164390_010 Hb_163175_010--Hb_171900_090 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17121 4.52118 8.96069 6.91796 4.27291 4.84951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94173 4.85527 3.1091 5.2404 4.48833

CAGE analysis