Hb_001227_120

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1227: 160819-165220
Sequence    

Annotation

kegg
ID rcu:RCOM_0382150
description Histone deacetylase 2a, putative
nr
ID XP_002528582.1
description Histone deacetylase 2a, putative [Ricinus communis]
swissprot
ID Q6V9I6
description Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1
trembl
ID B9SRG3
description Histone deacetylase 2a, putative OS=Ricinus communis GN=RCOM_0382150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06914: 160821-165213 , PASA_asmbl_06915: 160969-165215
cDNA
(Sanger)
(ID:Location)		 016_O05.ab1: 161920-165213

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_120 0.0 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
2 Hb_159809_070 0.055379331 - - phospholipase A-2-activating protein, putative [Ricinus communis]
3 Hb_001279_190 0.0629378981 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
4 Hb_000019_190 0.0646355935 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
5 Hb_023313_040 0.0699633545 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
6 Hb_000702_090 0.0719562901 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
7 Hb_081599_010 0.0740673076 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004228_120 0.0749876573 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
9 Hb_005064_010 0.0781827794 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
10 Hb_008304_020 0.0786226701 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
11 Hb_002552_040 0.0786984568 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
12 Hb_003098_070 0.07875996 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
13 Hb_002740_080 0.0788883581 - - flap endonuclease-1, putative [Ricinus communis]
14 Hb_000160_070 0.0792602076 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
15 Hb_007483_070 0.0816326348 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
16 Hb_000815_300 0.0817192369 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
17 Hb_004064_040 0.0825277475 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
18 Hb_000395_280 0.0828812446 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
19 Hb_001504_010 0.0830678924 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
20 Hb_030982_010 0.0833828542 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001227_120 Hb_001227_120 Hb_159809_070 Hb_159809_070 Hb_001227_120--Hb_159809_070 Hb_001279_190 Hb_001279_190 Hb_001227_120--Hb_001279_190 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_001227_120--Hb_023313_040 Hb_000702_090 Hb_000702_090 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010 Hb_000078_140 Hb_000078_140 Hb_159809_070--Hb_000078_140 Hb_079526_040 Hb_079526_040 Hb_159809_070--Hb_079526_040 Hb_065968_010 Hb_065968_010 Hb_159809_070--Hb_065968_010 Hb_006189_020 Hb_006189_020 Hb_159809_070--Hb_006189_020 Hb_008304_020 Hb_008304_020 Hb_159809_070--Hb_008304_020 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_002687_180 Hb_002687_180 Hb_001279_190--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_001279_190--Hb_004228_120 Hb_011716_010 Hb_011716_010 Hb_001279_190--Hb_011716_010 Hb_001250_050 Hb_001250_050 Hb_001279_190--Hb_001250_050 Hb_000019_190--Hb_023313_040 Hb_002014_010 Hb_002014_010 Hb_000019_190--Hb_002014_010 Hb_007007_040 Hb_007007_040 Hb_000019_190--Hb_007007_040 Hb_007248_030 Hb_007248_030 Hb_000019_190--Hb_007248_030 Hb_163175_010 Hb_163175_010 Hb_000019_190--Hb_163175_010 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_000006_010 Hb_000006_010 Hb_023313_040--Hb_000006_010 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_000702_090--Hb_007248_030 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_004586_060 Hb_004586_060 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_002740_080 Hb_002740_080 Hb_081599_010--Hb_002740_080 Hb_000152_600 Hb_000152_600 Hb_081599_010--Hb_000152_600 Hb_003498_100 Hb_003498_100 Hb_081599_010--Hb_003498_100 Hb_081599_010--Hb_001279_190 Hb_001269_130 Hb_001269_130 Hb_081599_010--Hb_001269_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7183 22.1265 52.5692 49.6218 20.2799 25.2748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7972 24.0014 16.5502 35.9782 32.7029

CAGE analysis