Hb_079526_040

Information

Type -
Description -
Location Contig79526: 67412-78796
Sequence    

Annotation

kegg
ID rcu:RCOM_0706270
description Conserved oligomeric Golgi complex component, putative
nr
ID XP_002516094.1
description Conserved oligomeric Golgi complex component, putative [Ricinus communis]
swissprot
ID Q9JJA2
description Conserved oligomeric Golgi complex subunit 8 OS=Mus musculus GN=Cog8 PE=2 SV=3
trembl
ID B9RQS5
description Conserved oligomeric Golgi complex component, putative OS=Ricinus communis GN=RCOM_0706270 PE=4 SV=1
Gene Ontology
ID GO:0017119
description conserved oligomeric golgi complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58529: 67260-78813
cDNA
(Sanger)
(ID:Location)		 033_L08.ab1: 74756-78807

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079526_040 0.0 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
2 Hb_001518_080 0.0587899592 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
3 Hb_000078_140 0.0589348608 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
4 Hb_003581_200 0.0638676626 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
5 Hb_159809_070 0.0651637437 - - phospholipase A-2-activating protein, putative [Ricinus communis]
6 Hb_000046_500 0.0667462267 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
7 Hb_005650_010 0.0727200231 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000260_470 0.0740863459 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
9 Hb_000205_140 0.0744585003 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
10 Hb_000477_050 0.0747274302 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
11 Hb_006189_020 0.0756602581 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
12 Hb_001348_080 0.0768138402 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
13 Hb_002811_270 0.077672817 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
14 Hb_000212_230 0.0781814088 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
15 Hb_019181_040 0.0784254846 - - component of oligomeric golgi complex, putative [Ricinus communis]
16 Hb_000101_080 0.0787919855 - - PREDICTED: protein CREG1 [Jatropha curcas]
17 Hb_002326_040 0.0788695018 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
18 Hb_001269_330 0.0796902996 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_002027_080 0.0799366676 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
20 Hb_007481_010 0.0802479652 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]

Gene co-expression network

sample Hb_079526_040 Hb_079526_040 Hb_001518_080 Hb_001518_080 Hb_079526_040--Hb_001518_080 Hb_000078_140 Hb_000078_140 Hb_079526_040--Hb_000078_140 Hb_003581_200 Hb_003581_200 Hb_079526_040--Hb_003581_200 Hb_159809_070 Hb_159809_070 Hb_079526_040--Hb_159809_070 Hb_000046_500 Hb_000046_500 Hb_079526_040--Hb_000046_500 Hb_005650_010 Hb_005650_010 Hb_079526_040--Hb_005650_010 Hb_000635_090 Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_002027_080 Hb_002027_080 Hb_001518_080--Hb_002027_080 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_003581_200--Hb_005650_010 Hb_000212_230 Hb_000212_230 Hb_003581_200--Hb_000212_230 Hb_003581_200--Hb_002027_080 Hb_000345_160 Hb_000345_160 Hb_003581_200--Hb_000345_160 Hb_003581_200--Hb_001518_080 Hb_001227_120 Hb_001227_120 Hb_159809_070--Hb_001227_120 Hb_159809_070--Hb_000078_140 Hb_065968_010 Hb_065968_010 Hb_159809_070--Hb_065968_010 Hb_006189_020 Hb_006189_020 Hb_159809_070--Hb_006189_020 Hb_008304_020 Hb_008304_020 Hb_159809_070--Hb_008304_020 Hb_019181_040 Hb_019181_040 Hb_000046_500--Hb_019181_040 Hb_007481_010 Hb_007481_010 Hb_000046_500--Hb_007481_010 Hb_000477_100 Hb_000477_100 Hb_000046_500--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_004679_030 Hb_004679_030 Hb_005650_010--Hb_004679_030 Hb_005650_010--Hb_002027_080 Hb_005650_010--Hb_000046_500 Hb_000359_210 Hb_000359_210 Hb_005650_010--Hb_000359_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.79385 4.94834 10.7756 11.2991 6.53552 6.12318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94253 5.82111 7.32514 9.30553 10.2626

CAGE analysis