Hb_000477_100

Information

Type -
Description -
Location Contig477: 163719-164741
Sequence    

Annotation

kegg
ID rcu:RCOM_0826170
description GDP-mannose transporter, putative
nr
ID XP_012078702.1
description PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
swissprot
ID Q84L08
description GDP-mannose transporter GONST4 OS=Arabidopsis thaliana GN=GONST4 PE=2 SV=1
trembl
ID A0A067KBG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13268 PE=4 SV=1
Gene Ontology
ID GO:0005794
description gdp-mannose transporter gonst4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44530: 163265-165037
cDNA
(Sanger)
(ID:Location)		 004_I11.ab1: 163345-164118 , 005_B24.ab1: 163264-163978 , 006_F06.ab1: 163287-164036 , 008_A15.ab1: 163351-163861

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_100 0.0 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
2 Hb_007481_010 0.0577655165 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
3 Hb_000046_500 0.0639684649 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
4 Hb_000352_300 0.0653141868 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
5 Hb_000146_040 0.0659347735 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
6 Hb_003097_140 0.0712511097 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
7 Hb_001051_070 0.0725351675 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
8 Hb_003529_030 0.0773591663 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
9 Hb_000256_150 0.0797176819 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
10 Hb_000322_080 0.0798466008 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
11 Hb_000072_130 0.081572344 - - hypothetical protein OsJ_28567 [Oryza sativa Japonica Group]
12 Hb_003998_040 0.0823918498 - - organic anion transporter, putative [Ricinus communis]
13 Hb_003528_030 0.0825381946 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
14 Hb_004102_170 0.0827806387 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
15 Hb_001014_210 0.0828534699 - - CYP51 [Hevea brasiliensis]
16 Hb_000853_200 0.082967383 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
17 Hb_002728_080 0.0836671392 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000140_350 0.0837064595 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009569_040 0.0837746266 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
20 Hb_000917_130 0.0841092763 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]

Gene co-expression network

sample Hb_000477_100 Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000477_100--Hb_007481_010 Hb_000046_500 Hb_000046_500 Hb_000477_100--Hb_000046_500 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_003528_030 Hb_003528_030 Hb_007481_010--Hb_003528_030 Hb_007481_010--Hb_000352_300 Hb_001269_330 Hb_001269_330 Hb_007481_010--Hb_001269_330 Hb_000256_150 Hb_000256_150 Hb_007481_010--Hb_000256_150 Hb_007481_010--Hb_000046_500 Hb_019181_040 Hb_019181_040 Hb_000046_500--Hb_019181_040 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_000352_300--Hb_003528_030 Hb_000184_070 Hb_000184_070 Hb_000352_300--Hb_000184_070 Hb_000352_300--Hb_000046_500 Hb_003683_020 Hb_003683_020 Hb_000352_300--Hb_003683_020 Hb_000140_350 Hb_000140_350 Hb_000146_040--Hb_000140_350 Hb_033286_010 Hb_033286_010 Hb_000146_040--Hb_033286_010 Hb_004102_170 Hb_004102_170 Hb_000146_040--Hb_004102_170 Hb_000146_040--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_000146_040--Hb_005797_010 Hb_003994_220 Hb_003994_220 Hb_003097_140--Hb_003994_220 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_007765_040 Hb_007765_040 Hb_003097_140--Hb_007765_040 Hb_000390_050 Hb_000390_050 Hb_003097_140--Hb_000390_050 Hb_027445_020 Hb_027445_020 Hb_003097_140--Hb_027445_020 Hb_007286_020 Hb_007286_020 Hb_001051_070--Hb_007286_020 Hb_000023_300 Hb_000023_300 Hb_001051_070--Hb_000023_300 Hb_011214_160 Hb_011214_160 Hb_001051_070--Hb_011214_160 Hb_003998_040 Hb_003998_040 Hb_001051_070--Hb_003998_040 Hb_000679_100 Hb_000679_100 Hb_001051_070--Hb_000679_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0889 17.1421 18.6805 46.5631 16.7601 20.2403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5824 16.1577 25.0703 26.8023 21.0398

CAGE analysis