Hb_001440_020

Information

Type -
Description -
Location Contig1440: 34779-39808
Sequence    

Annotation

kegg
ID rcu:RCOM_1647160
description exocyst componenet sec8, putative
nr
ID XP_002516392.1
description exocyst componenet sec8, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RRM3
description Exocyst componenet sec8, putative OS=Ricinus communis GN=RCOM_1647160 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11641: 38263-38581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001440_020 0.0 - - exocyst componenet sec8, putative [Ricinus communis]
2 Hb_012518_070 0.0597552391 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
3 Hb_012114_100 0.063073553 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
4 Hb_008511_020 0.0639542997 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
5 Hb_003097_140 0.06822887 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
6 Hb_002675_030 0.0720657052 - - coatomer beta subunit, putative [Ricinus communis]
7 Hb_001329_250 0.0774622923 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
8 Hb_004102_170 0.0785711437 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
9 Hb_009569_040 0.0796316983 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
10 Hb_000049_020 0.0811154427 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_003498_080 0.0836834278 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
12 Hb_012055_040 0.0839427666 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
13 Hb_001821_150 0.0839803728 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
14 Hb_003417_010 0.0841215921 - - PREDICTED: protein TPLATE [Jatropha curcas]
15 Hb_000046_500 0.0860621059 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
16 Hb_004679_030 0.0861073612 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
17 Hb_000212_420 0.0861613166 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
18 Hb_000773_040 0.0864095374 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
19 Hb_000960_040 0.0864259978 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
20 Hb_159809_030 0.0865961823 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001440_020 Hb_001440_020 Hb_012518_070 Hb_012518_070 Hb_001440_020--Hb_012518_070 Hb_012114_100 Hb_012114_100 Hb_001440_020--Hb_012114_100 Hb_008511_020 Hb_008511_020 Hb_001440_020--Hb_008511_020 Hb_003097_140 Hb_003097_140 Hb_001440_020--Hb_003097_140 Hb_002675_030 Hb_002675_030 Hb_001440_020--Hb_002675_030 Hb_001329_250 Hb_001329_250 Hb_001440_020--Hb_001329_250 Hb_012055_040 Hb_012055_040 Hb_012518_070--Hb_012055_040 Hb_000317_100 Hb_000317_100 Hb_012518_070--Hb_000317_100 Hb_012518_070--Hb_012114_100 Hb_005215_010 Hb_005215_010 Hb_012518_070--Hb_005215_010 Hb_000494_050 Hb_000494_050 Hb_012518_070--Hb_000494_050 Hb_006452_120 Hb_006452_120 Hb_012114_100--Hb_006452_120 Hb_011249_070 Hb_011249_070 Hb_012114_100--Hb_011249_070 Hb_012114_100--Hb_012055_040 Hb_003498_080 Hb_003498_080 Hb_012114_100--Hb_003498_080 Hb_008511_020--Hb_002675_030 Hb_002027_080 Hb_002027_080 Hb_008511_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160 Hb_003994_220 Hb_003994_220 Hb_003097_140--Hb_003994_220 Hb_007765_040 Hb_007765_040 Hb_003097_140--Hb_007765_040 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_000390_050 Hb_000390_050 Hb_003097_140--Hb_000390_050 Hb_027445_020 Hb_027445_020 Hb_003097_140--Hb_027445_020 Hb_000579_240 Hb_000579_240 Hb_002675_030--Hb_000579_240 Hb_000960_040 Hb_000960_040 Hb_002675_030--Hb_000960_040 Hb_001821_150 Hb_001821_150 Hb_002675_030--Hb_001821_150 Hb_000264_350 Hb_000264_350 Hb_002675_030--Hb_000264_350 Hb_001329_250--Hb_003498_080 Hb_000212_420 Hb_000212_420 Hb_001329_250--Hb_000212_420 Hb_005214_140 Hb_005214_140 Hb_001329_250--Hb_005214_140 Hb_004044_050 Hb_004044_050 Hb_001329_250--Hb_004044_050 Hb_001828_170 Hb_001828_170 Hb_001329_250--Hb_001828_170 Hb_000270_190 Hb_000270_190 Hb_001329_250--Hb_000270_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.55328 14.0871 13.3356 27.6126 13.5066 15.2877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.91069 8.62507 13.474 14.0289 20.1583

CAGE analysis