Hb_000494_050

Information

Type -
Description -
Location Contig494: 33012-36862
Sequence    

Annotation

kegg
ID rcu:RCOM_1608660
description cationic amino acid transporter, putative
nr
ID XP_002511602.1
description cationic amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9C5D6
description Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis thaliana GN=CAT9 PE=2 SV=1
trembl
ID B9RD13
description Cationic amino acid transporter, putative OS=Ricinus communis GN=RCOM_1608660 PE=4 SV=1
Gene Ontology
ID GO:0005774
description cationic amino acid transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45402: 34142-35136 , PASA_asmbl_45403: 35140-36591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000494_050 0.0 - - cationic amino acid transporter, putative [Ricinus communis]
2 Hb_000123_180 0.0560680675 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
3 Hb_012055_040 0.0572456281 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_005215_010 0.059614425 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
5 Hb_011819_020 0.0615300657 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
6 Hb_000317_100 0.0644251254 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
7 Hb_012518_070 0.0646513295 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
8 Hb_000667_030 0.0699653099 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
9 Hb_002890_130 0.0748304162 - - tip120, putative [Ricinus communis]
10 Hb_000003_100 0.0750328285 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
11 Hb_004044_050 0.0765906666 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
12 Hb_004410_120 0.0776232794 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
13 Hb_031527_030 0.0802604057 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
14 Hb_000331_580 0.0810977347 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
15 Hb_003417_010 0.0816948624 - - PREDICTED: protein TPLATE [Jatropha curcas]
16 Hb_134362_010 0.0824180787 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
17 Hb_123531_010 0.083422736 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
18 Hb_007894_160 0.0834572488 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
19 Hb_016172_030 0.0835448763 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
20 Hb_027506_010 0.0840558943 - - PREDICTED: cullin-4 [Jatropha curcas]

Gene co-expression network

sample Hb_000494_050 Hb_000494_050 Hb_000123_180 Hb_000123_180 Hb_000494_050--Hb_000123_180 Hb_012055_040 Hb_012055_040 Hb_000494_050--Hb_012055_040 Hb_005215_010 Hb_005215_010 Hb_000494_050--Hb_005215_010 Hb_011819_020 Hb_011819_020 Hb_000494_050--Hb_011819_020 Hb_000317_100 Hb_000317_100 Hb_000494_050--Hb_000317_100 Hb_012518_070 Hb_012518_070 Hb_000494_050--Hb_012518_070 Hb_000123_180--Hb_011819_020 Hb_012632_010 Hb_012632_010 Hb_000123_180--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_000123_180--Hb_002890_130 Hb_004019_120 Hb_004019_120 Hb_000123_180--Hb_004019_120 Hb_000123_180--Hb_012518_070 Hb_012055_040--Hb_012518_070 Hb_031527_030 Hb_031527_030 Hb_012055_040--Hb_031527_030 Hb_012055_040--Hb_005215_010 Hb_004410_120 Hb_004410_120 Hb_012055_040--Hb_004410_120 Hb_012055_040--Hb_000317_100 Hb_005215_010--Hb_000317_100 Hb_005215_010--Hb_002890_130 Hb_005215_010--Hb_011819_020 Hb_003040_050 Hb_003040_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_011819_020--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_011819_020--Hb_000261_480 Hb_011819_020--Hb_000317_100 Hb_002749_060 Hb_002749_060 Hb_011819_020--Hb_002749_060 Hb_003280_020 Hb_003280_020 Hb_011819_020--Hb_003280_020 Hb_000317_100--Hb_002890_130 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_001440_020 Hb_001440_020 Hb_012518_070--Hb_001440_020 Hb_012518_070--Hb_000317_100 Hb_012114_100 Hb_012114_100 Hb_012518_070--Hb_012114_100 Hb_012518_070--Hb_005215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.29883 24.6416 16.2453 25.1599 20.4191 15.2979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.88855 8.06333 15.2852 21.4602 22.4566

CAGE analysis