Hb_012055_040

Information

Type -
Description -
Location Contig12055: 32708-43331
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10280g
description hypothetical protein
nr
ID XP_012079340.1
description PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID U5G863
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s10280g PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06401: 35345-43307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012055_040 0.0 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
2 Hb_000494_050 0.0572456281 - - cationic amino acid transporter, putative [Ricinus communis]
3 Hb_012518_070 0.0603335521 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
4 Hb_031527_030 0.0615932931 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
5 Hb_005215_010 0.0651427615 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
6 Hb_004410_120 0.0657208209 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
7 Hb_000317_100 0.0670423347 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
8 Hb_002890_130 0.0673193164 - - tip120, putative [Ricinus communis]
9 Hb_011249_070 0.0680627472 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
10 Hb_012114_100 0.0686144935 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
11 Hb_011819_020 0.0691512244 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
12 Hb_001828_170 0.0701037741 - - PREDICTED: protein TPLATE [Jatropha curcas]
13 Hb_004032_200 0.0721761112 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
14 Hb_000028_130 0.0727053142 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
15 Hb_000003_100 0.0748732965 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
16 Hb_006839_010 0.0759114313 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
17 Hb_001329_250 0.0774708793 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
18 Hb_004030_080 0.079183513 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
19 Hb_011849_040 0.0800639309 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_003040_050 0.0803415669 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]

Gene co-expression network

sample Hb_012055_040 Hb_012055_040 Hb_000494_050 Hb_000494_050 Hb_012055_040--Hb_000494_050 Hb_012518_070 Hb_012518_070 Hb_012055_040--Hb_012518_070 Hb_031527_030 Hb_031527_030 Hb_012055_040--Hb_031527_030 Hb_005215_010 Hb_005215_010 Hb_012055_040--Hb_005215_010 Hb_004410_120 Hb_004410_120 Hb_012055_040--Hb_004410_120 Hb_000317_100 Hb_000317_100 Hb_012055_040--Hb_000317_100 Hb_000123_180 Hb_000123_180 Hb_000494_050--Hb_000123_180 Hb_000494_050--Hb_005215_010 Hb_011819_020 Hb_011819_020 Hb_000494_050--Hb_011819_020 Hb_000494_050--Hb_000317_100 Hb_000494_050--Hb_012518_070 Hb_001440_020 Hb_001440_020 Hb_012518_070--Hb_001440_020 Hb_012518_070--Hb_000317_100 Hb_012114_100 Hb_012114_100 Hb_012518_070--Hb_012114_100 Hb_012518_070--Hb_005215_010 Hb_012286_040 Hb_012286_040 Hb_031527_030--Hb_012286_040 Hb_000003_100 Hb_000003_100 Hb_031527_030--Hb_000003_100 Hb_004037_020 Hb_004037_020 Hb_031527_030--Hb_004037_020 Hb_000089_180 Hb_000089_180 Hb_031527_030--Hb_000089_180 Hb_011849_040 Hb_011849_040 Hb_031527_030--Hb_011849_040 Hb_005215_010--Hb_000317_100 Hb_002890_130 Hb_002890_130 Hb_005215_010--Hb_002890_130 Hb_005215_010--Hb_011819_020 Hb_003040_050 Hb_003040_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_031042_050 Hb_031042_050 Hb_004410_120--Hb_031042_050 Hb_013358_010 Hb_013358_010 Hb_004410_120--Hb_013358_010 Hb_000037_220 Hb_000037_220 Hb_004410_120--Hb_000037_220 Hb_001322_130 Hb_001322_130 Hb_004410_120--Hb_001322_130 Hb_000174_290 Hb_000174_290 Hb_004410_120--Hb_000174_290 Hb_000317_100--Hb_002890_130 Hb_000317_100--Hb_011819_020 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.58446 18.4239 9.39365 18.2123 11.3108 11.2727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.72645 8.07101 10.5764 13.5193 16.0632

CAGE analysis