Hb_000089_180

Information

Type -
Description -
Location Contig89: 202318-203418
Sequence    

Annotation

kegg
ID rcu:RCOM_0902180
description homoserine kinase, putative (EC:2.7.1.39)
nr
ID XP_012072838.1
description PREDICTED: homoserine kinase-like [Jatropha curcas]
swissprot
ID Q8L7R2
description Homoserine kinase OS=Arabidopsis thaliana GN=HSK PE=1 SV=1
trembl
ID A0A067KR83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05967 PE=3 SV=1
Gene Ontology
ID GO:0004413
description homoserine kinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61572: 202183-203404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_180 0.0 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
2 Hb_004128_130 0.0434889389 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
3 Hb_015026_130 0.0577157069 - - quinone oxidoreductase, putative [Ricinus communis]
4 Hb_000085_450 0.05874205 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
5 Hb_004143_100 0.0605972096 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001408_110 0.0609543131 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
7 Hb_004037_020 0.0638202085 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
8 Hb_031527_030 0.0645228118 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
9 Hb_000521_330 0.0647451422 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011360_050 0.0709639576 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
11 Hb_003906_200 0.0729797259 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
12 Hb_000215_300 0.0748575356 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
13 Hb_024650_080 0.0754317065 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
14 Hb_005215_020 0.0762244332 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
15 Hb_007839_020 0.077878019 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002492_010 0.0780503297 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
17 Hb_001114_110 0.0785623922 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
18 Hb_000046_570 0.0788216295 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
19 Hb_007062_030 0.0792803261 - - hypothetical protein VITISV_039033 [Vitis vinifera]
20 Hb_001481_060 0.0798988493 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000089_180 Hb_000089_180 Hb_004128_130 Hb_004128_130 Hb_000089_180--Hb_004128_130 Hb_015026_130 Hb_015026_130 Hb_000089_180--Hb_015026_130 Hb_000085_450 Hb_000085_450 Hb_000089_180--Hb_000085_450 Hb_004143_100 Hb_004143_100 Hb_000089_180--Hb_004143_100 Hb_001408_110 Hb_001408_110 Hb_000089_180--Hb_001408_110 Hb_004037_020 Hb_004037_020 Hb_000089_180--Hb_004037_020 Hb_004128_130--Hb_004143_100 Hb_000046_570 Hb_000046_570 Hb_004128_130--Hb_000046_570 Hb_004128_130--Hb_015026_130 Hb_004109_230 Hb_004109_230 Hb_004128_130--Hb_004109_230 Hb_000521_330 Hb_000521_330 Hb_004128_130--Hb_000521_330 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110 Hb_003020_100 Hb_003020_100 Hb_000085_450--Hb_003020_100 Hb_086063_020 Hb_086063_020 Hb_000085_450--Hb_086063_020 Hb_007137_050 Hb_007137_050 Hb_000085_450--Hb_007137_050 Hb_000085_450--Hb_004037_020 Hb_000402_230 Hb_000402_230 Hb_004143_100--Hb_000402_230 Hb_003866_080 Hb_003866_080 Hb_004143_100--Hb_003866_080 Hb_001089_050 Hb_001089_050 Hb_004143_100--Hb_001089_050 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_002492_010 Hb_002492_010 Hb_004143_100--Hb_002492_010 Hb_024650_080 Hb_024650_080 Hb_001408_110--Hb_024650_080 Hb_001408_110--Hb_004037_020 Hb_007839_020 Hb_007839_020 Hb_001408_110--Hb_007839_020 Hb_001241_010 Hb_001241_010 Hb_001408_110--Hb_001241_010 Hb_010407_080 Hb_010407_080 Hb_001408_110--Hb_010407_080 Hb_016172_030 Hb_016172_030 Hb_004037_020--Hb_016172_030 Hb_000345_160 Hb_000345_160 Hb_004037_020--Hb_000345_160 Hb_001481_060 Hb_001481_060 Hb_004037_020--Hb_001481_060 Hb_004037_020--Hb_086063_020 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004705_170 Hb_004705_170 Hb_004037_020--Hb_004705_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2162 31.5482 19.2198 33.5703 13.4027 17.8216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.295 16.5701 13.1115 27.2216 19.9023

CAGE analysis