Hb_000085_450

Information

Type transcription factor
Description TF Family: WRKY
Location Contig85: 436801-443987
Sequence    

Annotation

kegg
ID rcu:RCOM_0047180
description WRKY transcription factor, putative
nr
ID XP_012070967.1
description PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
swissprot
ID Q93WV0
description Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1
trembl
ID M9TMC3
description Uncharacterized protein OS=Jatropha curcas GN=WRKY09 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60393: 436836-443961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_450 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
2 Hb_015026_130 0.0581300255 - - quinone oxidoreductase, putative [Ricinus communis]
3 Hb_000089_180 0.05874205 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
4 Hb_003020_100 0.0620533044 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
5 Hb_086063_020 0.0664841424 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
6 Hb_007137_050 0.066790113 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_004037_020 0.0688101933 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
8 Hb_000215_300 0.0722025822 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
9 Hb_005215_020 0.0737666956 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
10 Hb_016172_030 0.0749861044 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
11 Hb_031527_030 0.0758315117 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
12 Hb_019280_010 0.076158633 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
13 Hb_006006_040 0.0762241709 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
14 Hb_024650_080 0.0767836396 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
15 Hb_001500_100 0.0786936018 - - conserved hypothetical protein [Ricinus communis]
16 Hb_102698_010 0.0799442263 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
17 Hb_004128_130 0.0799626154 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
18 Hb_000322_080 0.0803198562 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
19 Hb_001097_040 0.0803953014 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
20 Hb_021165_010 0.0821816523 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_450 Hb_000085_450 Hb_015026_130 Hb_015026_130 Hb_000085_450--Hb_015026_130 Hb_000089_180 Hb_000089_180 Hb_000085_450--Hb_000089_180 Hb_003020_100 Hb_003020_100 Hb_000085_450--Hb_003020_100 Hb_086063_020 Hb_086063_020 Hb_000085_450--Hb_086063_020 Hb_007137_050 Hb_007137_050 Hb_000085_450--Hb_007137_050 Hb_004037_020 Hb_004037_020 Hb_000085_450--Hb_004037_020 Hb_015026_130--Hb_000089_180 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110 Hb_000089_180--Hb_004128_130 Hb_004143_100 Hb_004143_100 Hb_000089_180--Hb_004143_100 Hb_001408_110 Hb_001408_110 Hb_000089_180--Hb_001408_110 Hb_000089_180--Hb_004037_020 Hb_000322_080 Hb_000322_080 Hb_003020_100--Hb_000322_080 Hb_006006_040 Hb_006006_040 Hb_003020_100--Hb_006006_040 Hb_001500_100 Hb_001500_100 Hb_003020_100--Hb_001500_100 Hb_000836_460 Hb_000836_460 Hb_003020_100--Hb_000836_460 Hb_021165_010 Hb_021165_010 Hb_003020_100--Hb_021165_010 Hb_000215_300 Hb_000215_300 Hb_086063_020--Hb_000215_300 Hb_086063_020--Hb_004037_020 Hb_001405_210 Hb_001405_210 Hb_086063_020--Hb_001405_210 Hb_000258_110 Hb_000258_110 Hb_086063_020--Hb_000258_110 Hb_000702_090 Hb_000702_090 Hb_086063_020--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_086063_020--Hb_016172_030 Hb_188063_050 Hb_188063_050 Hb_007137_050--Hb_188063_050 Hb_001097_040 Hb_001097_040 Hb_007137_050--Hb_001097_040 Hb_010042_030 Hb_010042_030 Hb_007137_050--Hb_010042_030 Hb_002740_090 Hb_002740_090 Hb_007137_050--Hb_002740_090 Hb_000579_130 Hb_000579_130 Hb_007137_050--Hb_000579_130 Hb_004037_020--Hb_016172_030 Hb_000345_160 Hb_000345_160 Hb_004037_020--Hb_000345_160 Hb_001481_060 Hb_001481_060 Hb_004037_020--Hb_001481_060 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004705_170 Hb_004705_170 Hb_004037_020--Hb_004705_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.70774 11.5426 8.61257 18.1206 5.79139 7.14488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.42484 5.82908 5.3843 13.172 10.0017

CAGE analysis