Hb_188063_050

Information

Type -
Description -
Location Contig188063: 46288-50949
Sequence    

Annotation

kegg
ID rcu:RCOM_1469490
description RNA binding protein, putative
nr
ID XP_012080394.1
description PREDICTED: putative G3BP-like protein [Jatropha curcas]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID A0A067KHN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11735 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g3bp-like protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18566: 46408-50006
cDNA
(Sanger)
(ID:Location)		 047_K03.ab1: 46408-49605

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188063_050 0.0 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
2 Hb_007137_050 0.0635267269 - - Uncharacterized protein isoform 1 [Theobroma cacao]
3 Hb_000320_290 0.0693550092 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
4 Hb_000258_110 0.0783144119 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
5 Hb_086063_020 0.0788320397 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
6 Hb_002740_090 0.0798166044 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
7 Hb_000243_300 0.0806437958 - - catalytic, putative [Ricinus communis]
8 Hb_001141_310 0.0811122602 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
9 Hb_030982_010 0.084249535 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010042_030 0.0842516629 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
11 Hb_086639_080 0.0868343826 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004102_170 0.0869576306 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
13 Hb_015026_130 0.0877232964 - - quinone oxidoreductase, putative [Ricinus communis]
14 Hb_001307_240 0.0881991495 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
15 Hb_141069_010 0.0893178489 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001405_210 0.089743386 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
17 Hb_000238_030 0.0898461787 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_002007_260 0.0900973045 - - beta-mannosidase, putative [Ricinus communis]
19 Hb_000622_110 0.0903131374 - - cmp-sialic acid transporter, putative [Ricinus communis]
20 Hb_001258_110 0.0917275101 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_188063_050 Hb_188063_050 Hb_007137_050 Hb_007137_050 Hb_188063_050--Hb_007137_050 Hb_000320_290 Hb_000320_290 Hb_188063_050--Hb_000320_290 Hb_000258_110 Hb_000258_110 Hb_188063_050--Hb_000258_110 Hb_086063_020 Hb_086063_020 Hb_188063_050--Hb_086063_020 Hb_002740_090 Hb_002740_090 Hb_188063_050--Hb_002740_090 Hb_000243_300 Hb_000243_300 Hb_188063_050--Hb_000243_300 Hb_000085_450 Hb_000085_450 Hb_007137_050--Hb_000085_450 Hb_001097_040 Hb_001097_040 Hb_007137_050--Hb_001097_040 Hb_010042_030 Hb_010042_030 Hb_007137_050--Hb_010042_030 Hb_007137_050--Hb_002740_090 Hb_000579_130 Hb_000579_130 Hb_007137_050--Hb_000579_130 Hb_000054_040 Hb_000054_040 Hb_000320_290--Hb_000054_040 Hb_121089_030 Hb_121089_030 Hb_000320_290--Hb_121089_030 Hb_000320_290--Hb_010042_030 Hb_030982_010 Hb_030982_010 Hb_000320_290--Hb_030982_010 Hb_000098_050 Hb_000098_050 Hb_000320_290--Hb_000098_050 Hb_001141_310 Hb_001141_310 Hb_000258_110--Hb_001141_310 Hb_000836_460 Hb_000836_460 Hb_000258_110--Hb_000836_460 Hb_000258_110--Hb_086063_020 Hb_000238_030 Hb_000238_030 Hb_000258_110--Hb_000238_030 Hb_000215_300 Hb_000215_300 Hb_000258_110--Hb_000215_300 Hb_004037_020 Hb_004037_020 Hb_000258_110--Hb_004037_020 Hb_086063_020--Hb_000215_300 Hb_086063_020--Hb_004037_020 Hb_001405_210 Hb_001405_210 Hb_086063_020--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_086063_020--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_086063_020--Hb_016172_030 Hb_002740_090--Hb_086063_020 Hb_000703_330 Hb_000703_330 Hb_002740_090--Hb_000703_330 Hb_001250_050 Hb_001250_050 Hb_002740_090--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_002740_090--Hb_001227_120 Hb_141069_010 Hb_141069_010 Hb_000243_300--Hb_141069_010 Hb_001085_110 Hb_001085_110 Hb_000243_300--Hb_001085_110 Hb_004109_370 Hb_004109_370 Hb_000243_300--Hb_004109_370 Hb_009252_050 Hb_009252_050 Hb_000243_300--Hb_009252_050 Hb_039946_050 Hb_039946_050 Hb_000243_300--Hb_039946_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86098 8.93699 10.6084 18.1416 8.1978 9.90859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.71339 4.53567 3.3126 13.4745 8.84414

CAGE analysis