Hb_000320_290

Information

Type -
Description -
Location Contig320: 216315-220012
Sequence    

Annotation

kegg
ID cmo:103484618
description putative lactoylglutathione lyase
nr
ID XP_012091330.1
description PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
swissprot
ID Q39366
description Putative lactoylglutathione lyase OS=Brassica oleracea var. gemmifera PE=2 SV=1
trembl
ID A0A067JAG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21208 PE=4 SV=1
Gene Ontology
ID GO:0004462
description lactoylglutathione lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33804: 216309-220016 , PASA_asmbl_33805: 216254-220005 , PASA_asmbl_33806: 216331-220005
cDNA
(Sanger)
(ID:Location)		 037_I21.ab1: 216254-218851 , 044_J20.ab1: 216320-218836

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_290 0.0 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
2 Hb_000054_040 0.0670066964 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
3 Hb_121089_030 0.0676992739 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
4 Hb_010042_030 0.068060121 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
5 Hb_188063_050 0.0693550092 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
6 Hb_030982_010 0.0701090084 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000098_050 0.0737541158 - - BnaCnng11900D [Brassica napus]
8 Hb_005062_110 0.0740548561 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
9 Hb_000503_020 0.0757248966 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
10 Hb_000640_070 0.0792212683 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
11 Hb_002007_260 0.0801865422 - - beta-mannosidase, putative [Ricinus communis]
12 Hb_001159_030 0.0810432718 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
13 Hb_044486_020 0.0819035085 - - CASTOR protein [Glycine max]
14 Hb_008397_010 0.0834881582 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
15 Hb_086639_080 0.0860028561 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000085_260 0.0877223616 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
17 Hb_002784_030 0.0894406626 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
18 Hb_001856_180 0.0896333059 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
19 Hb_008511_020 0.0909484436 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
20 Hb_000161_210 0.0910417765 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]

Gene co-expression network

sample Hb_000320_290 Hb_000320_290 Hb_000054_040 Hb_000054_040 Hb_000320_290--Hb_000054_040 Hb_121089_030 Hb_121089_030 Hb_000320_290--Hb_121089_030 Hb_010042_030 Hb_010042_030 Hb_000320_290--Hb_010042_030 Hb_188063_050 Hb_188063_050 Hb_000320_290--Hb_188063_050 Hb_030982_010 Hb_030982_010 Hb_000320_290--Hb_030982_010 Hb_000098_050 Hb_000098_050 Hb_000320_290--Hb_000098_050 Hb_000261_210 Hb_000261_210 Hb_000054_040--Hb_000261_210 Hb_000503_020 Hb_000503_020 Hb_000054_040--Hb_000503_020 Hb_002473_050 Hb_002473_050 Hb_000054_040--Hb_002473_050 Hb_001246_130 Hb_001246_130 Hb_000054_040--Hb_001246_130 Hb_005062_110 Hb_005062_110 Hb_000054_040--Hb_005062_110 Hb_000017_230 Hb_000017_230 Hb_121089_030--Hb_000017_230 Hb_121089_030--Hb_030982_010 Hb_021165_010 Hb_021165_010 Hb_121089_030--Hb_021165_010 Hb_001552_030 Hb_001552_030 Hb_121089_030--Hb_001552_030 Hb_121089_030--Hb_010042_030 Hb_000085_260 Hb_000085_260 Hb_010042_030--Hb_000085_260 Hb_001159_030 Hb_001159_030 Hb_010042_030--Hb_001159_030 Hb_010042_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_010042_030--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_010042_030--Hb_000579_130 Hb_007137_050 Hb_007137_050 Hb_188063_050--Hb_007137_050 Hb_000258_110 Hb_000258_110 Hb_188063_050--Hb_000258_110 Hb_086063_020 Hb_086063_020 Hb_188063_050--Hb_086063_020 Hb_002740_090 Hb_002740_090 Hb_188063_050--Hb_002740_090 Hb_000243_300 Hb_000243_300 Hb_188063_050--Hb_000243_300 Hb_030982_010--Hb_001246_130 Hb_006120_050 Hb_006120_050 Hb_030982_010--Hb_006120_050 Hb_000163_090 Hb_000163_090 Hb_030982_010--Hb_000163_090 Hb_030982_010--Hb_021165_010 Hb_009247_010 Hb_009247_010 Hb_000098_050--Hb_009247_010 Hb_000098_050--Hb_005062_110 Hb_000098_050--Hb_000085_260 Hb_000890_030 Hb_000890_030 Hb_000098_050--Hb_000890_030 Hb_044486_020 Hb_044486_020 Hb_000098_050--Hb_044486_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.008 175.497 222.07 360.248 175.213 191.342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.9365 54.8154 84.6022 198.826 181.139

CAGE analysis